Miyakogusa Predicted Gene

Lj0g3v0107279.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0107279.1 Non Characterized Hit- tr|I3T2Z2|I3T2Z2_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2 SV,76.79,7e-19,
,13169_g.1
         (56 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g084280.1 | transcription factor | HC | chr2:35473507-3547...   100   2e-22
Medtr4g057270.1 | transcription factor | HC | chr4:20952448-2095...    86   7e-18

>Medtr2g084280.1 | transcription factor | HC |
           chr2:35473507-35475350 | 20130731
          Length = 313

 Score =  100 bits (250), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 44/56 (78%), Positives = 52/56 (92%)

Query: 1   MFQVEERGYYVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSFVLTFTMN 56
           MFQVEERGYY KI+CNKG GVA SLY+A+ESLA FNV+N+NLATVCD+F+LTFT+N
Sbjct: 226 MFQVEERGYYAKILCNKGEGVAASLYKALESLANFNVQNSNLATVCDTFLLTFTLN 281


>Medtr4g057270.1 | transcription factor | HC |
           chr4:20952448-20950145 | 20130731
          Length = 335

 Score = 85.9 bits (211), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/56 (67%), Positives = 48/56 (85%)

Query: 1   MFQVEERGYYVKIVCNKGAGVAVSLYRAIESLAGFNVRNTNLATVCDSFVLTFTMN 56
           MFQV+ERG+YVKIVCNKG  VA SLY+++ESL  FNV+N+NLATV D F+ TF++N
Sbjct: 246 MFQVDERGFYVKIVCNKGERVAASLYKSLESLRDFNVQNSNLATVSDGFLFTFSLN 301