Miyakogusa Predicted Gene

Lj0g3v0107179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0107179.1 Non Characterized Hit- tr|B9R7B9|B9R7B9_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,32.82,1e-18,seg,NULL,CUFF.6119.1
         (194 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g019360.1 | cold regulated protein, putative | HC | chr1:5...   175   3e-44

>Medtr1g019360.1 | cold regulated protein, putative | HC |
           chr1:5822836-5825887 | 20130731
          Length = 174

 Score =  175 bits (443), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 94/176 (53%), Positives = 116/176 (65%), Gaps = 20/176 (11%)

Query: 5   MQGIMQTDEWTDEKHSMYIKSIEASFVSQLYESKQPATTY-----------GQFKVHRGG 53
           M+GI + +EWTDEKHSMYIKSIEASFV+ LY+SKQP  ++           GQFKV RGG
Sbjct: 1   MEGIRENEEWTDEKHSMYIKSIEASFVNDLYDSKQPGASFSSKGRPNESTTGQFKVLRGG 60

Query: 54  FWQKISFERENPQMSSTSRINQCADLTANPWIQHYRSS----RVAAPSLTS-EVVKFGQK 108
            WQK++FERENPQM   S++N   D  A+PWIQHYRSS       APS TS +VV   Q+
Sbjct: 61  CWQKLNFERENPQM---SKVNPHNDFIASPWIQHYRSSIKQESAVAPSPTSQQVVTSSQR 117

Query: 109 KGISSKSGQFHLSESYVSDQDMICDDTEMSDQNFIDXXXXXXXXXSIGNVKRHTSM 164
           K ISSK+G  H+ ES V  ++MIC DTE+SDQNF+D         +  N KR  S+
Sbjct: 118 KKISSKAGHLHMYESQVYHENMICSDTEVSDQNFVDEEVKCEKKNT-SNAKRRKSL 172