Miyakogusa Predicted Gene

Lj0g3v0107099.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0107099.1 Non Characterized Hit- tr|I3SKZ0|I3SKZ0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.05,0,no
description,NULL; FIBRILLARIN,Fibrillarin, conserved site; RRNA
2-O-METHYLTRANSFERASE FIBRILLARIN,CUFF.6117.1
         (267 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g114000.1 | mediator of RNA polymerase II transcription su...   404   e-113
Medtr6g047580.2 | mediator of RNA polymerase II transcription su...   394   e-110
Medtr6g047580.1 | mediator of RNA polymerase II transcription su...   394   e-110
Medtr6g047580.3 | mediator of RNA polymerase II transcription su...   356   2e-98
Medtr6g047580.4 | mediator of RNA polymerase II transcription su...   313   1e-85
Medtr8g030490.1 | fibrillarin protein | LC | chr8:11292197-11292...    59   4e-09

>Medtr1g114000.1 | mediator of RNA polymerase II transcription
           subunit 36a | HC | chr1:51431328-51427705 | 20130731
          Length = 313

 Score =  404 bits (1037), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/210 (93%), Positives = 203/210 (96%), Gaps = 1/210 (0%)

Query: 57  MKGGSRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVW 116
           MKGGS+V+VEPHRHEGIFIAKG KEDALVTKNLVPGEAVYNEKRVTVQ EDGTK EYR+W
Sbjct: 69  MKGGSKVIVEPHRHEGIFIAKG-KEDALVTKNLVPGEAVYNEKRVTVQNEDGTKTEYRIW 127

Query: 117 NPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSG 176
           NPFRSKLAAA+LGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSG
Sbjct: 128 NPFRSKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSG 187

Query: 177 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQARILGLNASYFLKTG 236
           RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVAQPDQARILGLNASY+LK G
Sbjct: 188 RDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAG 247

Query: 237 GHFVISIKANCIDSTVPAETVFVNEVNKLK 266
           GHFVISIKANCIDSTVPAE VF  EVNKLK
Sbjct: 248 GHFVISIKANCIDSTVPAEAVFSAEVNKLK 277


>Medtr6g047580.2 | mediator of RNA polymerase II transcription
           subunit 36a | HC | chr6:17127276-17131212 | 20130731
          Length = 277

 Score =  394 bits (1012), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/206 (93%), Positives = 200/206 (97%), Gaps = 1/206 (0%)

Query: 61  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 120
           S+VVVEPHRHEGIFIAKG KEDALVTKNLVPGEAVYNEKRV+VQ EDGTK EYR+WNPFR
Sbjct: 37  SKVVVEPHRHEGIFIAKG-KEDALVTKNLVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFR 95

Query: 121 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 180
           SKLAAA+LGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV
Sbjct: 96  SKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 155

Query: 181 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQARILGLNASYFLKTGGHFV 240
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVAQPDQARILGLNASY+LK GGHFV
Sbjct: 156 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFV 215

Query: 241 ISIKANCIDSTVPAETVFVNEVNKLK 266
           ISIKANCIDSTVPAE VF +EVNKLK
Sbjct: 216 ISIKANCIDSTVPAEAVFSSEVNKLK 241


>Medtr6g047580.1 | mediator of RNA polymerase II transcription
           subunit 36a | HC | chr6:17127229-17131313 | 20130731
          Length = 309

 Score =  394 bits (1012), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 193/206 (93%), Positives = 200/206 (97%), Gaps = 1/206 (0%)

Query: 61  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 120
           S+VVVEPHRHEGIFIAKG KEDALVTKNLVPGEAVYNEKRV+VQ EDGTK EYR+WNPFR
Sbjct: 69  SKVVVEPHRHEGIFIAKG-KEDALVTKNLVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFR 127

Query: 121 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 180
           SKLAAA+LGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV
Sbjct: 128 SKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 187

Query: 181 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQARILGLNASYFLKTGGHFV 240
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVAQPDQARILGLNASY+LK GGHFV
Sbjct: 188 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFV 247

Query: 241 ISIKANCIDSTVPAETVFVNEVNKLK 266
           ISIKANCIDSTVPAE VF +EVNKLK
Sbjct: 248 ISIKANCIDSTVPAEAVFSSEVNKLK 273


>Medtr6g047580.3 | mediator of RNA polymerase II transcription
           subunit 36a | HC | chr6:17127276-17131212 | 20130731
          Length = 261

 Score =  356 bits (913), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 174/185 (94%), Positives = 181/185 (97%), Gaps = 1/185 (0%)

Query: 61  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 120
           S+VVVEPHRHEGIFIAKG KEDALVTKNLVPGEAVYNEKRV+VQ EDGTK EYR+WNPFR
Sbjct: 69  SKVVVEPHRHEGIFIAKG-KEDALVTKNLVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFR 127

Query: 121 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 180
           SKLAAA+LGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV
Sbjct: 128 SKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 187

Query: 181 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQARILGLNASYFLKTGGHFV 240
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVAQPDQARILGLNASY+LK GGHFV
Sbjct: 188 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFV 247

Query: 241 ISIKA 245
           ISIK+
Sbjct: 248 ISIKS 252


>Medtr6g047580.4 | mediator of RNA polymerase II transcription
           subunit 36a | HC | chr6:17127238-17131313 | 20130731
          Length = 262

 Score =  313 bits (802), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 153/161 (95%), Positives = 158/161 (98%), Gaps = 1/161 (0%)

Query: 61  SRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNEKRVTVQKEDGTKEEYRVWNPFR 120
           S+VVVEPHRHEGIFIAKG KEDALVTKNLVPGEAVYNEKRV+VQ EDGTK EYR+WNPFR
Sbjct: 69  SKVVVEPHRHEGIFIAKG-KEDALVTKNLVPGEAVYNEKRVSVQNEDGTKVEYRIWNPFR 127

Query: 121 SKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 180
           SKLAAA+LGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV
Sbjct: 128 SKLAAAVLGGVDNIWIKPGAKVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLV 187

Query: 181 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVVFSDVAQPDQ 221
           NMAKKRTNVIPIIEDARHPAKYRMLVGMVDV+FSDVAQPDQ
Sbjct: 188 NMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQ 228


>Medtr8g030490.1 | fibrillarin protein | LC |
          chr8:11292197-11292030 | 20130731
          Length = 55

 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/42 (61%), Positives = 33/42 (78%)

Query: 57 MKGGSRVVVEPHRHEGIFIAKGGKEDALVTKNLVPGEAVYNE 98
          M+GGS+ V+ PHRHEG+FI K    DAL+TKNLVPGE+ + E
Sbjct: 1  MRGGSKGVIIPHRHEGVFIFKTSNSDALLTKNLVPGESFHIE 42