Miyakogusa Predicted Gene

Lj0g3v0106939.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0106939.1 Non Characterized Hit- tr|I3SP13|I3SP13_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,78.95,1e-17,INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL; no descrip,CUFF.6107.1
         (83 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g032500.1 | cleavage and polyadenylation specificity facto...    94   3e-20
Medtr1g032500.2 | cleavage and polyadenylation specificity facto...    93   6e-20
Medtr2g006180.1 | cleavage and polyadenylation specificity facto...    50   6e-07

>Medtr1g032500.1 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11549764 | 20130731
          Length = 534

 Score = 94.0 bits (232), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/57 (78%), Positives = 48/57 (84%)

Query: 24  LVLKIFHCRSTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQVFSLM 80
           L L +    STYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQ   ++
Sbjct: 194 LRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQELRIL 250


>Medtr1g032500.2 | cleavage and polyadenylation specificity factor,
           putative | HC | chr1:11561666-11551365 | 20130731
          Length = 415

 Score = 92.8 bits (229), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/57 (78%), Positives = 48/57 (84%)

Query: 24  LVLKIFHCRSTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQVFSLM 80
           L L +    STYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQ   ++
Sbjct: 194 LRLDLLITESTYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQELRIL 250


>Medtr2g006180.1 | cleavage and polyadenylation specificity factor |
           HC | chr2:489334-485307 | 20130731
          Length = 690

 Score = 49.7 bits (117), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 33  STYATTIRDSKYAREREFLKAVHKCVSGGGKVLIPTFALGRAQVFSLM 80
           STY       ++ RE+ F   +H  +S GG+VLIP +ALGRAQ   L+
Sbjct: 215 STYGVQHHQPRHTREKRFTDVIHSTISQGGRVLIPAYALGRAQELLLI 262