Miyakogusa Predicted Gene

Lj0g3v0106869.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0106869.1 Non Characterized Hit- tr|B9RVY3|B9RVY3_RICCO
Cleavage and polyadenylation specificity factor,
putat,83.02,0,CPSF100_C,Cleavage and polyadenylation specificity
factor 2, C-terminal; RMMBL,RNA-metabolising meta,CUFF.6097.1
         (377 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g050492.1 | cleavage and polyadenylation specificity facto...   702   0.0  
Medtr7g089260.1 | pentatricopeptide (PPR) repeat protein | HC | ...    68   1e-11

>Medtr1g050492.1 | cleavage and polyadenylation specificity factor
           subunit 2 | HC | chr1:19478035-19486897 | 20130731
          Length = 740

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/377 (89%), Positives = 357/377 (94%)

Query: 1   MLQADPPPKAVKVTVSKRVPLVGDELIAYEEEQNRIKKEEALKASLIKAEELKASHGADS 60
           MLQADPPPKAVKVTVSKRVPLVG+ELIAYEEEQNRIKKEEALKASL+K EE KAS GAD+
Sbjct: 364 MLQADPPPKAVKVTVSKRVPLVGEELIAYEEEQNRIKKEEALKASLMKEEEFKASQGADN 423

Query: 61  NTSDPMVIDTGNNLIAPEVAGPRGGGYRDIFVDGFVPPSTSVAPMFPCYENTSEWDDFGE 120
           N  DPM+IDTGN+  +PEVA P+ GGYRD+F+DGFVPPS+SVAPMFPCYEN +EWDDFGE
Sbjct: 424 NAIDPMIIDTGNSQPSPEVAVPKNGGYRDVFIDGFVPPSSSVAPMFPCYENITEWDDFGE 483

Query: 121 VINPDDYVIKDEDMDQTAMHVGGDINGKLDEGAASLILDTKPSKVISDERTVQVRCSLVY 180
           VINPDDYVIK+EDMDQ A +VGGD+NGKLDE AASLI DTKPSKVISDERTVQVRCSLVY
Sbjct: 484 VINPDDYVIKEEDMDQAANNVGGDLNGKLDESAASLIFDTKPSKVISDERTVQVRCSLVY 543

Query: 181 MDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATEHLKQHCLKNVCPHVYAPQIEETIDV 240
           MDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEAT+HLKQHCLKNVCPHVYAPQIEETIDV
Sbjct: 544 MDFEGRSDGRSIKNILSHVAPLKLVLVHGSAEATDHLKQHCLKNVCPHVYAPQIEETIDV 603

Query: 241 TSDLCAYKVQLSEKLMSNVLFKKLGDYEVAWVDAEVGKAENDTLSLLPVSGATPPHKSVL 300
           TSDLCAYKVQLSEKLMS+VLFKKLG+YEVAWVDAE GK END LSLLPVSGA  PHKSVL
Sbjct: 604 TSDLCAYKVQLSEKLMSSVLFKKLGEYEVAWVDAEAGKTENDMLSLLPVSGAPHPHKSVL 663

Query: 301 VGDLKLADFKQFLSSKGVQVEFAGGALRCGEYVTVRKVGDASQKGAGSGTQQIIIEGPLC 360
           VGDLKLADFKQFLS+KGV VEFAGGALRCGEYVTVRKVGDA+QKGAGSGTQQIIIEGPLC
Sbjct: 664 VGDLKLADFKQFLSTKGVPVEFAGGALRCGEYVTVRKVGDATQKGAGSGTQQIIIEGPLC 723

Query: 361 EDYYKIREYLYSQFYLL 377
           EDYYKIR+YLYSQFYLL
Sbjct: 724 EDYYKIRDYLYSQFYLL 740


>Medtr7g089260.1 | pentatricopeptide (PPR) repeat protein | HC |
            chr7:34908078-34912174 | 20130731
          Length = 1099

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/36 (83%), Positives = 33/36 (91%)

Query: 342  SQKGAGSGTQQIIIEGPLCEDYYKIREYLYSQFYLL 377
            S +GA S T+QIIIEGPLCEDYYKIR+YLYSQFYLL
Sbjct: 1064 SPEGADSATRQIIIEGPLCEDYYKIRDYLYSQFYLL 1099