Miyakogusa Predicted Gene

Lj0g3v0106739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0106739.1 tr|I1LVF4|I1LVF4_SOYBN Chaperone protein DnaJ
OS=Glycine max GN=dnaJ PE=3 SV=1,81.13,0.000000000000009, ,CUFF.6086.1
         (55 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g023470.1 | DnaJ-class molecular chaperone | HC | chr4:792...    52   1e-07
Medtr3g027580.1 | DnaJ-class molecular chaperone | HC | chr3:863...    48   2e-06

>Medtr4g023470.1 | DnaJ-class molecular chaperone | HC |
          chr4:7922442-7931444 | 20130731
          Length = 442

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/39 (61%), Positives = 29/39 (74%), Gaps = 1/39 (2%)

Query: 1  MVRSHGVTLFNRLARQSLYNATDNSVYQALFQRGYRVLN 39
          M+R  G+TLF  LAR+SL+ A D SVYQ +FQRGYR  N
Sbjct: 1  MIRPTGITLFTHLARRSLFRAKD-SVYQVVFQRGYRTFN 38


>Medtr3g027580.1 | DnaJ-class molecular chaperone | HC |
          chr3:8636396-8646405 | 20130731
          Length = 443

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 1  MVRSHGVTLFNRLARQSLYNATDNSVYQALFQRGYRVLNSGLCN-PSRVVGS 51
          MVRS+GV L  R    +L    + SVY+ + QRGYR LNSGLCN  S+V G+
Sbjct: 1  MVRSNGVKLLLRSLSPNLLR--NKSVYEGVLQRGYRTLNSGLCNRSSKVTGN 50