Miyakogusa Predicted Gene

Lj0g3v0106609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0106609.1 tr|F2EJT9|F2EJT9_HORVD Predicted protein
(Fragment) OS=Hordeum vulgare var. distichum PE=2
SV=1,41.67,0.000000000000001,Thioredoxin-like,Thioredoxin-like fold;
seg,NULL; no description,Thioredoxin-like fold; SUBFAMILY
NO,CUFF.6074.1
         (119 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g014240.1 | thioredoxin | HC | chr3:4014347-4010920 | 2013...   102   1e-22
Medtr1g037680.1 | thioredoxin-like protein | LC | chr1:13972784-...    74   3e-14

>Medtr3g014240.1 | thioredoxin | HC | chr3:4014347-4010920 |
           20130731
          Length = 160

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 68/121 (56%), Gaps = 11/121 (9%)

Query: 1   MALFHCHVPSHHXXXXXX--XXXXXXXXXXXXXCVSSSSLTHQHPYXXXXXXXXXXXXXX 58
           MALFH +   HH                       + SS THQHPY              
Sbjct: 1   MALFHSYTLPHHKLSTLSPFSTFSSKPLSVSPSSSAFSSSTHQHPYPLTISTDFNNRKLL 60

Query: 59  XXXXXXXXXCKPPQGKFVRQDYLVEKLSAKEVQDLVKGERDVPLIIDFYATWCGPCILMA 118
                    CKPP+GK V++DYLV+KLSA+E+Q+LVKG+R+VPLIIDFYATWCGPCILMA
Sbjct: 61  ---------CKPPKGKHVKEDYLVKKLSAEEIQELVKGDRNVPLIIDFYATWCGPCILMA 111

Query: 119 Q 119
           Q
Sbjct: 112 Q 112


>Medtr1g037680.1 | thioredoxin-like protein | LC |
           chr1:13972784-13979275 | 20130731
          Length = 186

 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/52 (67%), Positives = 40/52 (76%), Gaps = 9/52 (17%)

Query: 68  CKPPQGKFVRQDYLVEKLSAKEVQDLVKGERDVPLIIDFYATWCGPCILMAQ 119
           C P  GK         KLSA+E+Q+LVKG+R+VPLIIDFYATWCGPCILMAQ
Sbjct: 75  CLPLNGK---------KLSAEEIQELVKGDRNVPLIIDFYATWCGPCILMAQ 117