Miyakogusa Predicted Gene

Lj0g3v0105289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0105289.1 Non Characterized Hit- tr|I1KC34|I1KC34_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,79.67,0,SNURPORTIN1
(RNUT1 PROTEIN) (RNA, U TRANSPORTER 1),NULL; DNA ligase/mRNA capping
enzyme, catalytic d,CUFF.5997.1
         (417 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g074980.1 | plant/F13M23-20 protein | HC | chr3:33881592-3...   717   0.0  

>Medtr3g074980.1 | plant/F13M23-20 protein | HC |
           chr3:33881592-33876343 | 20130731
          Length = 414

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/420 (83%), Positives = 376/420 (89%), Gaps = 9/420 (2%)

Query: 1   MAPHDLRRPFKRPAISDQERRRQHSLLRQAQNRLDAQRHARFLASTVFSLSS-QTPDSSE 59
           MAPHDLRRPFKRP ISDQERRRQ SLLRQAQNRLDAQ HARFL ST FSLSS QTP   E
Sbjct: 1   MAPHDLRRPFKRPLISDQERRRQQSLLRQAQNRLDAQHHARFLVSTAFSLSSSQTP---E 57

Query: 60  IELDLVPEPENQPEPSHKELDVLEASKLKGSEARKWFSKQLMHPEWMIDIPDSLSPNWFV 119
            E + + EPE+     + ELDVLEASKLKG+EARKWF+KQLMHPEWMIDIP++L+ +WFV
Sbjct: 58  PETEPIHEPESH---QNDELDVLEASKLKGAEARKWFAKQLMHPEWMIDIPENLTNDWFV 114

Query: 120 FARPSGKRCFVVSCNGTTISRLRNGSVLHRFPSALPSGARKKD--SGSSQSYSILDCIFH 177
            ARPSGKRCFVVS NGTTISRLRNGS+LHRFPS LP+GAR KD  SGSS SYSILDCIFH
Sbjct: 115 LARPSGKRCFVVSSNGTTISRLRNGSILHRFPSKLPNGARTKDVNSGSSNSYSILDCIFH 174

Query: 178 ELDQTYYVIDMVCWRDYSLYDCTAEFRFFWLNSKVAESGACDPPSHYHKYRFSLVPVYSC 237
           E DQTYYVIDMVCWR YSLYDCT+EFRFFW+NSK+AE+GA DPPS+YHKY FSLVPVY C
Sbjct: 175 EQDQTYYVIDMVCWRGYSLYDCTSEFRFFWVNSKLAETGAFDPPSYYHKYSFSLVPVYGC 234

Query: 238 DRDGLYAAYTAPVPYVKDGLLFYNKHAHYQAGITPLVLVWKDENCSQYVMDTDSKGQVPN 297
           D+ GL +AY+APVPYVKDGLLFYNKHAHYQAGITPL LVWKDENCSQYVMDTDSKGQVPN
Sbjct: 235 DQSGLCSAYSAPVPYVKDGLLFYNKHAHYQAGITPLALVWKDENCSQYVMDTDSKGQVPN 294

Query: 298 QQQVVLELQEDGKLTTSDDPPVVFGCLDGSFTQQSELLSGCLLRFAIGEAGLVLVDGKLE 357
           QQQVVLELQEDGKLTT DDPPVVFGCLDGSF QQS+L SG LLRFAIGE GLVLV GKLE
Sbjct: 295 QQQVVLELQEDGKLTTCDDPPVVFGCLDGSFIQQSDLHSGYLLRFAIGEEGLVLVGGKLE 354

Query: 358 KADLNYLGKVNRARASADSFSKVMFQYSVRHSPLRIDDLLGSVSSPVDEESKPCDIEMDG 417
           KADL YLGK NRARASADSFSKVMFQYSVRHSPL++DDLLGSVSSPVD+ESK CDIEMDG
Sbjct: 355 KADLQYLGKANRARASADSFSKVMFQYSVRHSPLKLDDLLGSVSSPVDQESKACDIEMDG 414