Miyakogusa Predicted Gene

Lj0g3v0105109.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0105109.1 tr|K1VW22|K1VW22_SPIPL 50S ribosomal protein L10
OS=Arthrospira platensis C1 PE=4
SV=1,34.22,1e-18,Ribosomal_L10,Ribosomal protein L10; SUBFAMILY NOT
NAMED,Ribosomal protein L10; FAMILY NOT NAMED,NUL,CUFF.5990.1
         (227 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g131540.1 | ribosomal protein L10 family protein | HC | ch...   384   e-107
Medtr4g131540.2 | ribosomal protein L10 family protein | HC | ch...   282   1e-76
Medtr3g058560.1 | ribosomal protein L10 family protein | LC | ch...    82   4e-16

>Medtr4g131540.1 | ribosomal protein L10 family protein | HC |
           chr4:54878186-54879223 | 20130731
          Length = 234

 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/228 (82%), Positives = 208/228 (91%), Gaps = 5/228 (2%)

Query: 1   MEATASALSFALPSPKSQTFQILNRPINPFNPGPTFK--PLR--HRFSSITAAIPRTKKE 56
           MEATA+ LSF+LPS K+Q+FQIL RPINPFNP  ++K  P+   HR S I AAI RTKKE
Sbjct: 1   MEATATLLSFSLPSTKTQSFQILTRPINPFNPPTSYKHRPISKTHRLS-INAAISRTKKE 59

Query: 57  ETVDSVRKQLENCYLLAGINYKGFTVKQFQELRKTLPETTTLIVAKNTLVYKAVEGTEWE 116
           ETV++V++QLENCYLLAGINYKGFTVKQFQELRKTLPETT L+VAKNTLVYKA+EGT+WE
Sbjct: 60  ETVETVKEQLENCYLLAGINYKGFTVKQFQELRKTLPETTKLVVAKNTLVYKALEGTQWE 119

Query: 117 TLKPCMKGMNVWLFVHTEEIPKAIKPYRDFQKEKKLDENDFTGAVFEGKFYGPNEFKKLE 176
           TLKPCM GMNVWLFVHTEEIP AIKPYRDFQKEKKL+ENDFTGAVFEGKFYGP+EFKKLE
Sbjct: 120 TLKPCMTGMNVWLFVHTEEIPSAIKPYRDFQKEKKLEENDFTGAVFEGKFYGPDEFKKLE 179

Query: 177 TLPTRAEIYANLLGSLKSPASALVSTLQAPARELVMTLKAHVKNLEEQ 224
           TLPTR EIYANLLGSLKSP+SALV+T+QAPAREL+M LKAH+K LEEQ
Sbjct: 180 TLPTRGEIYANLLGSLKSPSSALVTTIQAPARELIMVLKAHIKKLEEQ 227


>Medtr4g131540.2 | ribosomal protein L10 family protein | HC |
           chr4:54878206-54879240 | 20130731
          Length = 194

 Score =  282 bits (722), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 149/228 (65%), Positives = 169/228 (74%), Gaps = 45/228 (19%)

Query: 1   MEATASALSFALPSPKSQTFQILNRPINPFNPGPTFK--PLR--HRFSSITAAIPRTKKE 56
           MEATA+ LSF+LPS K+Q+FQIL RPINPFNP  ++K  P+   HR S I AAI RTKKE
Sbjct: 1   MEATATLLSFSLPSTKTQSFQILTRPINPFNPPTSYKHRPISKTHRLS-INAAISRTKKE 59

Query: 57  ETVDSVRKQLENCYLLAGINYKGFTVKQFQELRKTLPETTTLIVAKNTLVYKAVEGTEWE 116
           ETV++V++QLENCYLLAGINYKGFTVKQFQELRKTLPETT L+VAKNTLVYKA+EGT+WE
Sbjct: 60  ETVETVKEQLENCYLLAGINYKGFTVKQFQELRKTLPETTKLVVAKNTLVYKALEGTQWE 119

Query: 117 TLKPCMKGMNVWLFVHTEEIPKAIKPYRDFQKEKKLDENDFTGAVFEGKFYGPNEFKKLE 176
           TLKPCM                                         GKFYGP+EFKKLE
Sbjct: 120 TLKPCMT----------------------------------------GKFYGPDEFKKLE 139

Query: 177 TLPTRAEIYANLLGSLKSPASALVSTLQAPARELVMTLKAHVKNLEEQ 224
           TLPTR EIYANLLGSLKSP+SALV+T+QAPAREL+M LKAH+K LEEQ
Sbjct: 140 TLPTRGEIYANLLGSLKSPSSALVTTIQAPARELIMVLKAHIKKLEEQ 187


>Medtr3g058560.1 | ribosomal protein L10 family protein | LC |
           chr3:23273147-23273485 | 20130731
          Length = 113

 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 2/67 (2%)

Query: 39  LRHRFSSITAAIPRTKKEETVDSVRKQLENCYLLAGINYKGFTVKQFQELRKTLPETTTL 98
            +H+ ++ ++ I       TV++ ++QLENCYLLAGINYKGFTVKQFQELRKTLPET T 
Sbjct: 49  FQHQTTTNSSTIAT--NSSTVETKKEQLENCYLLAGINYKGFTVKQFQELRKTLPETMTP 106

Query: 99  IVAKNTL 105
           +V KN L
Sbjct: 107 VVVKNML 113