Miyakogusa Predicted Gene

Lj0g3v0104809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104809.1 tr|D5LAY5|D5LAY5_CHLRE 97782m OS=Chlamydomonas
reinhardtii GN=97782m PE=4 SV=1,31.38,4e-19,UNCHARACTERIZED,GINS
complex, subunit Psf3; Sld5,GINS complex,CUFF.5957.1
         (185 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g070470.2 | DNA replication complex GINS protein | HC | ch...   351   3e-97
Medtr3g070470.1 | DNA replication complex GINS protein | HC | ch...   351   3e-97
Medtr3g070470.3 | DNA replication complex GINS protein | HC | ch...   331   3e-91

>Medtr3g070470.2 | DNA replication complex GINS protein | HC |
           chr3:31621672-31624900 | 20130731
          Length = 186

 Score =  351 bits (900), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 167/186 (89%), Positives = 176/186 (94%), Gaps = 1/186 (0%)

Query: 1   MAKYYDIDDIMVEEEIVSVIFQKSASGVGI-DPSSETDLIEAGSKVELPFWLAHELQLRQ 59
           MA YYD+DDI+VEEEIVSVIFQK+ASGVGI DPSSETD IEAGSKVELPFWLAHELQLRQ
Sbjct: 1   MANYYDMDDILVEEEIVSVIFQKAASGVGIIDPSSETDFIEAGSKVELPFWLAHELQLRQ 60

Query: 60  AVSVNVPPCFNQKTRLEIQADSASVDLKSRCPFFYEFGCKIAPIVGDRTIGFLLLSAFKS 119
           AVSVNVPPCFNQKTRLEIQAD A VDL+SRCP+FYEFGCKIAPIVGDRTIGFLLLSAFK+
Sbjct: 61  AVSVNVPPCFNQKTRLEIQADCACVDLRSRCPYFYEFGCKIAPIVGDRTIGFLLLSAFKN 120

Query: 120 RYKEVLTKAHTAAFATGSKFWTILTKEEINLYEVAQSAMASFKKWRMGGPRFQISNVLGR 179
           RYKEVLTKAHTAA A GSKFWTILT EEINLYE AQSAMASFKKWRMGGPRFQI+++LGR
Sbjct: 121 RYKEVLTKAHTAAIAAGSKFWTILTNEEINLYETAQSAMASFKKWRMGGPRFQIASILGR 180

Query: 180 KRKSTE 185
           KRK TE
Sbjct: 181 KRKPTE 186


>Medtr3g070470.1 | DNA replication complex GINS protein | HC |
           chr3:31619317-31624900 | 20130731
          Length = 186

 Score =  351 bits (900), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 167/186 (89%), Positives = 176/186 (94%), Gaps = 1/186 (0%)

Query: 1   MAKYYDIDDIMVEEEIVSVIFQKSASGVGI-DPSSETDLIEAGSKVELPFWLAHELQLRQ 59
           MA YYD+DDI+VEEEIVSVIFQK+ASGVGI DPSSETD IEAGSKVELPFWLAHELQLRQ
Sbjct: 1   MANYYDMDDILVEEEIVSVIFQKAASGVGIIDPSSETDFIEAGSKVELPFWLAHELQLRQ 60

Query: 60  AVSVNVPPCFNQKTRLEIQADSASVDLKSRCPFFYEFGCKIAPIVGDRTIGFLLLSAFKS 119
           AVSVNVPPCFNQKTRLEIQAD A VDL+SRCP+FYEFGCKIAPIVGDRTIGFLLLSAFK+
Sbjct: 61  AVSVNVPPCFNQKTRLEIQADCACVDLRSRCPYFYEFGCKIAPIVGDRTIGFLLLSAFKN 120

Query: 120 RYKEVLTKAHTAAFATGSKFWTILTKEEINLYEVAQSAMASFKKWRMGGPRFQISNVLGR 179
           RYKEVLTKAHTAA A GSKFWTILT EEINLYE AQSAMASFKKWRMGGPRFQI+++LGR
Sbjct: 121 RYKEVLTKAHTAAIAAGSKFWTILTNEEINLYETAQSAMASFKKWRMGGPRFQIASILGR 180

Query: 180 KRKSTE 185
           KRK TE
Sbjct: 181 KRKPTE 186


>Medtr3g070470.3 | DNA replication complex GINS protein | HC |
           chr3:31619317-31624900 | 20130731
          Length = 179

 Score =  331 bits (848), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 160/186 (86%), Positives = 169/186 (90%), Gaps = 8/186 (4%)

Query: 1   MAKYYDIDDIMVEEEIVSVIFQKSASGVGI-DPSSETDLIEAGSKVELPFWLAHELQLRQ 59
           MA YYD+DDI+VEEE       K+ASGVGI DPSSETD IEAGSKVELPFWLAHELQLRQ
Sbjct: 1   MANYYDMDDILVEEE-------KAASGVGIIDPSSETDFIEAGSKVELPFWLAHELQLRQ 53

Query: 60  AVSVNVPPCFNQKTRLEIQADSASVDLKSRCPFFYEFGCKIAPIVGDRTIGFLLLSAFKS 119
           AVSVNVPPCFNQKTRLEIQAD A VDL+SRCP+FYEFGCKIAPIVGDRTIGFLLLSAFK+
Sbjct: 54  AVSVNVPPCFNQKTRLEIQADCACVDLRSRCPYFYEFGCKIAPIVGDRTIGFLLLSAFKN 113

Query: 120 RYKEVLTKAHTAAFATGSKFWTILTKEEINLYEVAQSAMASFKKWRMGGPRFQISNVLGR 179
           RYKEVLTKAHTAA A GSKFWTILT EEINLYE AQSAMASFKKWRMGGPRFQI+++LGR
Sbjct: 114 RYKEVLTKAHTAAIAAGSKFWTILTNEEINLYETAQSAMASFKKWRMGGPRFQIASILGR 173

Query: 180 KRKSTE 185
           KRK TE
Sbjct: 174 KRKPTE 179