Miyakogusa Predicted Gene

Lj0g3v0104549.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104549.1 Non Characterized Hit- tr|H9WEJ2|H9WEJ2_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=C,62.38,3e-19,coiled-coil,NULL; seg,NULL,CUFF.5938.1
         (150 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g006790.1 | hypothetical protein | HC | chr3:868171-864960...   250   3e-67

>Medtr3g006790.1 | hypothetical protein | HC | chr3:868171-864960 |
           20130731
          Length = 204

 Score =  250 bits (639), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 121/150 (80%), Positives = 130/150 (86%)

Query: 1   MTSGGELAYQQLCSGITTEFNDCSKKVLEMESLFRSPDYCRVDLAQILRAVQDQEKQKLH 60
           MTSGGELAYQQLC GIT+EFNDCSKKV EMESLF+SPDY R+DLAQILRAVQ+QEKQKLH
Sbjct: 55  MTSGGELAYQQLCGGITSEFNDCSKKVREMESLFQSPDYSRIDLAQILRAVQEQEKQKLH 114

Query: 61  LTATIQLLKKAGRPSERLVSHENCKYTKPSEHVCANVQEITEASGTXXXXXXXXXXXXLK 120
           LTAT+QLLKKAGRPSERLVSHENCK+TKP+EH C +V+EITEASGT            L 
Sbjct: 115 LTATLQLLKKAGRPSERLVSHENCKFTKPTEHECVHVKEITEASGTEEAEADAEYDNALN 174

Query: 121 EAIRGVQDAVMAINEHLEEVRYEIAALEVE 150
           EAIRGVQDAV  INEHLEEVRYEIAALEVE
Sbjct: 175 EAIRGVQDAVNVINEHLEEVRYEIAALEVE 204