Miyakogusa Predicted Gene

Lj0g3v0104349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104349.1 Non Characterized Hit- tr|G7PY20|G7PY20_MACFA
Putative uncharacterized protein OS=Macaca fasciculari,60,2e-19,WD40
repeat-like,WD40-repeat-containing domain; WD40,WD40 repeat; no
description,WD40/YVTN repeat-li,CUFF.5924.1
         (101 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g080700.1 | glutamate-rich WD repeat protein | HC | chr8:3...   138   1e-33
Medtr5g024090.1 | glutamate-rich WD repeat protein | HC | chr5:9...   119   9e-28

>Medtr8g080700.1 | glutamate-rich WD repeat protein | HC |
           chr8:34739832-34734055 | 20130731
          Length = 469

 Score =  138 bits (348), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/101 (67%), Positives = 75/101 (74%), Gaps = 2/101 (1%)

Query: 1   MSSHLNSLXXXXXXXXXXXXXXXQVPLQKFKHKDEGYAIDWSPVVPGRLVSGDCNNCIYL 60
           MSSHLN+L               Q PLQKFKHKDEGYAIDWSP+VPGRLVSGDCNN IYL
Sbjct: 192 MSSHLNALAETETDGVQGVDAV-QAPLQKFKHKDEGYAIDWSPLVPGRLVSGDCNNSIYL 250

Query: 61  WEPNSAAATWSVDNAPFIGHTASVEDLQWSPKDHDIFASCS 101
           WEP S AATW+++  PF GHT SVEDLQWSP +  +FASCS
Sbjct: 251 WEPTS-AATWNIEKTPFTGHTDSVEDLQWSPTEPHVFASCS 290


>Medtr5g024090.1 | glutamate-rich WD repeat protein | HC |
           chr5:9647473-9652782 | 20130731
          Length = 455

 Score =  119 bits (297), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 71/101 (70%), Gaps = 5/101 (4%)

Query: 1   MSSHLNSLXXXXXXXXXXXXXXXQVPLQKFKHKDEGYAIDWSPVVPGRLVSGDCNNCIYL 60
           MSSHL +L               QVPLQKFKHKDEGYAIDW+P     L+SGDCNN IYL
Sbjct: 186 MSSHLKALAETETEGVQGDDVA-QVPLQKFKHKDEGYAIDWNP--HACLLSGDCNNNIYL 242

Query: 61  WEPNSAAATWSVDNAPFIGHTASVEDLQWSPKDHDIFASCS 101
           WEP SAA TW++D  PF GHT SVEDLQWSPK  D+FASCS
Sbjct: 243 WEPTSAA-TWNIDQTPFTGHTGSVEDLQWSPKP-DVFASCS 281