Miyakogusa Predicted Gene

Lj0g3v0104259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0104259.1 tr|I3SCY1|I3SCY1_LOTJA DNA primase OS=Lotus
japonicus PE=2 SV=1,98.75,0,DNA_primase_S,DNA primase, small subunit;
DNA PRIMASE SMALL SUBUNIT,DNA primase, small subunit, euka,CUFF.5920.1
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g062490.1 | DNA primase small subunit | HC | chr3:28213216...   278   2e-75

>Medtr3g062490.1 | DNA primase small subunit | HC |
           chr3:28213216-28220088 | 20130731
          Length = 433

 Score =  278 bits (711), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 128/157 (81%), Positives = 139/157 (88%)

Query: 4   MITDQELDFNPNYLKLYYGKLFPFTDIFRWMSYGNDGKHPGCDSSYFGRREFSFTLENDI 63
           MI  Q+ +F+ N LK YYGKLFP+ DIF+WMSYG+DGKHPGCD SYFGRREFSFTL  D 
Sbjct: 1   MIPQQDSEFDSNCLKPYYGKLFPYADIFKWMSYGHDGKHPGCDQSYFGRREFSFTLNGDF 60

Query: 64  YLRFQSFNNALELENSIKEKSPFKIDIGPVYTVDPAKRHAYAQGDNKVFAPVERELIFDI 123
           YLRFQS+NNALELE +IKEK P KIDIGPVYTVDPAKRHAYAQ DN VF PVERELIFDI
Sbjct: 61  YLRFQSYNNALELEKAIKEKCPLKIDIGPVYTVDPAKRHAYAQSDNNVFTPVERELIFDI 120

Query: 124 DMSDYDDVRYCCSGADVCLNCWPLMTIAIKVIDTALR 160
           DM+DYDDVRYCC GADVCL+CWPLMTIAIKVIDT+LR
Sbjct: 121 DMTDYDDVRYCCKGADVCLDCWPLMTIAIKVIDTSLR 157