Miyakogusa Predicted Gene

Lj0g3v0103959.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103959.4 Non Characterized Hit- tr|B7FID7|B7FID7_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,87.56,0,seg,NULL; RNA-binding domain, RBD,NULL; RNA recognition
motif,RNA recognition motif domain; RRM_1,RN,CUFF.5917.4
         (215 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g089990.1 | polyadenylate-binding protein II | HC | chr8:3...   239   2e-63
Medtr4g094260.1 | polyadenylate-binding protein II | HC | chr4:3...   193   8e-50
Medtr1g073000.3 | polyadenylate-binding protein II | HC | chr1:3...   178   4e-45
Medtr1g073000.1 | polyadenylate-binding protein II | HC | chr1:3...   178   4e-45
Medtr1g073000.2 | polyadenylate-binding protein II | HC | chr1:3...   178   4e-45
Medtr1g049070.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   121   6e-28
Medtr1g069140.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   115   2e-26
Medtr1g069140.2 | RNA recognition motif, a.k.a. RRM, RBD protein...   115   2e-26
Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    57   1e-08

>Medtr8g089990.1 | polyadenylate-binding protein II | HC |
           chr8:37630582-37636333 | 20130731
          Length = 216

 Score =  239 bits (609), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 127/216 (58%), Positives = 132/216 (61%), Gaps = 1/216 (0%)

Query: 1   MDEEEHEVYGGEIPDVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQA 60
           MDEEEHEVYGGEIPDV                                           A
Sbjct: 1   MDEEEHEVYGGEIPDVAEMEGDVDMSAADDEAGGMKELDEMRRRLKEMEEEAAALREMHA 60

Query: 61  KVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIL 120
           KVEKEIG+VQDP     SQ NKEE D RSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIL
Sbjct: 61  KVEKEIGSVQDPASVAASQENKEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTIL 120

Query: 121 TDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRRYDPY 180
           TDKFGQPKGF              L L+ESELHGRQLKVLPKRTNVPGMKQYRPRR++PY
Sbjct: 121 TDKFGQPKGFAYVEFVETEAVQEALLLSESELHGRQLKVLPKRTNVPGMKQYRPRRFNPY 180

Query: 181 MAYGXXX-XXXXXXXXXXXXGKVPRFRRPARYMPYY 215
           MAYG                GK PR+RRP RYMPYY
Sbjct: 181 MAYGFRRPYAPPYMYSPYGYGKAPRYRRPNRYMPYY 216


>Medtr4g094260.1 | polyadenylate-binding protein II | HC |
           chr4:37371600-37377016 | 20130731
          Length = 199

 Score =  193 bits (491), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 99/161 (61%), Positives = 109/161 (67%), Gaps = 4/161 (2%)

Query: 59  QAKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVT 118
           QAKVEKE+G+VQDP     SQ N+EE D RS+FVGNVDYACTPE+VQQHFQSCGTVNRVT
Sbjct: 39  QAKVEKEMGSVQDPANASASQINREEVDARSIFVGNVDYACTPEDVQQHFQSCGTVNRVT 98

Query: 119 ILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRR-Y 177
           I TDKFGQPKG+              L LNESELHGRQLKV  KRTNVPGMKQ+RPRR  
Sbjct: 99  IRTDKFGQPKGYAYVEFVEVEAVQEALLLNESELHGRQLKVTAKRTNVPGMKQFRPRRPS 158

Query: 178 DPYMAY---GXXXXXXXXXXXXXXXGKVPRFRRPARYMPYY 215
           +PYM +                   GK+PRFR   RY PYY
Sbjct: 159 NPYMGFRGRTPYAPPFAYAPAPYGYGKIPRFRMGMRYSPYY 199


>Medtr1g073000.3 | polyadenylate-binding protein II | HC |
           chr1:32414624-32417752 | 20130731
          Length = 187

 Score =  178 bits (451), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/181 (52%), Positives = 103/181 (56%), Gaps = 6/181 (3%)

Query: 1   MDEEEHEVYGGEIPD------VGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 54
           M++EEHEVYG +IPD                                             
Sbjct: 1   MEQEEHEVYGADIPDEEVDMDADIDAEHQEGDEELASNHTTKELEDMKKRLKEIEEEASA 60

Query: 55  XXXXQAKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTV 114
               QAKVEKE+G VQDP     SQA KEE D RS++VGNVDYACTPEEVQQHFQSCGTV
Sbjct: 61  LREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTV 120

Query: 115 NRVTILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRP 174
           NRVTILTDKFGQPKGF              L LNE+ELHGRQLKV  KRTNVPG+KQY  
Sbjct: 121 NRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKVSAKRTNVPGLKQYGR 180

Query: 175 R 175
           R
Sbjct: 181 R 181


>Medtr1g073000.1 | polyadenylate-binding protein II | HC |
           chr1:32414615-32419459 | 20130731
          Length = 187

 Score =  178 bits (451), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/181 (52%), Positives = 103/181 (56%), Gaps = 6/181 (3%)

Query: 1   MDEEEHEVYGGEIPD------VGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 54
           M++EEHEVYG +IPD                                             
Sbjct: 1   MEQEEHEVYGADIPDEEVDMDADIDAEHQEGDEELASNHTTKELEDMKKRLKEIEEEASA 60

Query: 55  XXXXQAKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTV 114
               QAKVEKE+G VQDP     SQA KEE D RS++VGNVDYACTPEEVQQHFQSCGTV
Sbjct: 61  LREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTV 120

Query: 115 NRVTILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRP 174
           NRVTILTDKFGQPKGF              L LNE+ELHGRQLKV  KRTNVPG+KQY  
Sbjct: 121 NRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKVSAKRTNVPGLKQYGR 180

Query: 175 R 175
           R
Sbjct: 181 R 181


>Medtr1g073000.2 | polyadenylate-binding protein II | HC |
           chr1:32414624-32419295 | 20130731
          Length = 187

 Score =  178 bits (451), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 95/181 (52%), Positives = 103/181 (56%), Gaps = 6/181 (3%)

Query: 1   MDEEEHEVYGGEIPD------VGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 54
           M++EEHEVYG +IPD                                             
Sbjct: 1   MEQEEHEVYGADIPDEEVDMDADIDAEHQEGDEELASNHTTKELEDMKKRLKEIEEEASA 60

Query: 55  XXXXQAKVEKEIGTVQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTV 114
               QAKVEKE+G VQDP     SQA KEE D RS++VGNVDYACTPEEVQQHFQSCGTV
Sbjct: 61  LREMQAKVEKEMGAVQDPAGSSVSQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTV 120

Query: 115 NRVTILTDKFGQPKGFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRP 174
           NRVTILTDKFGQPKGF              L LNE+ELHGRQLKV  KRTNVPG+KQY  
Sbjct: 121 NRVTILTDKFGQPKGFAYVEFVEADAVQNALILNETELHGRQLKVSAKRTNVPGLKQYGR 180

Query: 175 R 175
           R
Sbjct: 181 R 181


>Medtr1g049070.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           LC | chr1:18949410-18945722 | 20130731
          Length = 150

 Score =  121 bits (303), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 64/132 (48%), Positives = 76/132 (57%), Gaps = 5/132 (3%)

Query: 83  EETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFXXXXXXXXXXXX 142
           EE D RSV+VGNVDYACT + V+QHFQSCG V+RVTIL +++  PKG             
Sbjct: 24  EEVDARSVYVGNVDYACTAKVVKQHFQSCGIVSRVTILLNEYCLPKGCAYVEFQNIDAVP 83

Query: 143 XXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRRYDPYMAYGXXXXXXXXXXXXXXXGKV 202
             L LNESEL+GR++KV  KRTN+PGM Q+R R       Y                G  
Sbjct: 84  KALLLNESELYGRKIKVCAKRTNIPGMNQHRGRN-----TYVLRSRRPPPVYRRPGYGSA 138

Query: 203 PRFRRPARYMPY 214
           PRFRR  RY PY
Sbjct: 139 PRFRRSMRYRPY 150


>Medtr1g069140.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:29709858-29712924 | 20130731
          Length = 292

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 68/107 (63%)

Query: 69  VQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPK 128
           V+ P          E+T  RS+ VGNV YACTP+EVQQHFQSCGTVNRV ILTDKFG+P+
Sbjct: 150 VRGPAGSSVPHVANEDTYARSIHVGNVHYACTPKEVQQHFQSCGTVNRVKILTDKFGRPE 209

Query: 129 GFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPR 175
           GF              L LN SELHGR L V  K T+VP +KQYR R
Sbjct: 210 GFACVEFVEADAVQNALGLNGSELHGRLLNVSSKCTHVPELKQYRRR 256


>Medtr1g069140.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:29710530-29713176 | 20130731
          Length = 283

 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/107 (56%), Positives = 68/107 (63%)

Query: 69  VQDPXXXXXSQANKEETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPK 128
           V+ P          E+T  RS+ VGNV YACTP+EVQQHFQSCGTVNRV ILTDKFG+P+
Sbjct: 141 VRGPAGSSVPHVANEDTYARSIHVGNVHYACTPKEVQQHFQSCGTVNRVKILTDKFGRPE 200

Query: 129 GFXXXXXXXXXXXXXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPR 175
           GF              L LN SELHGR L V  K T+VP +KQYR R
Sbjct: 201 GFACVEFVEADAVQNALGLNGSELHGRLLNVSSKCTHVPELKQYRRR 247


>Medtr3g028140.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr3:8902502-8910404 | 20130731
          Length = 685

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 2/100 (2%)

Query: 83  EETDGRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFXXXXXXXXXXX 141
           E+ D R++FV NV +A T + + +HF   G V +V I+TD   GQPKG            
Sbjct: 506 EDVDSRTIFVSNVHFAATKDALSRHFNKFGEVLKVIIVTDAATGQPKGAAYVEFMLKEAA 565

Query: 142 XXXLRLNESELHGRQLKVLPKRTNVPGMKQYRPRRYDPYM 181
              L L+ +    R LKV+ K++  P  ++  P    P++
Sbjct: 566 DNALSLDGTSFMSRILKVV-KKSAAPAQQESAPTTTWPHV 604