Miyakogusa Predicted Gene

Lj0g3v0103829.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103829.1 tr|D8RN79|D8RN79_SELML DNA-directed RNA
polymerase OS=Selaginella moellendorffii
GN=SELMODRAFT_41306,30.46,9e-19,RNA_pol_Rpb1_5,RNA polymerase Rpb1,
domain 5; DNA-DIRECTED RNA POLYMERASE,NULL; beta and beta-prime
,CUFF.5895.1
         (339 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g038990.1 | DNA-directed RNA polymerase | HC | chr8:144590...   579   e-165
Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076...    89   6e-18
Medtr5g023020.1 | DNA-directed RNA polymerase | HC | chr5:913015...    74   3e-13

>Medtr8g038990.1 | DNA-directed RNA polymerase | HC |
           chr8:14459096-14475944 | 20130731
          Length = 2010

 Score =  579 bits (1492), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 275/339 (81%), Positives = 305/339 (89%)

Query: 1   MESIFSNGFSVGLHDFSISGAVKRVTDRNIGKVSPLLYQLRFIYNELVAQQLEKHMQDIE 60
           ME+IF++GFSVGL DFSIS AVKRV +R+IGKVSPLL QLR +Y ELVAQQLEK +QDIE
Sbjct: 635 MENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLRGMYKELVAQQLEKVIQDIE 694

Query: 61  LPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKL 120
           LP I F  KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RG+ YSKGL+EDVASHF+L
Sbjct: 695 LPVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKFYSKGLVEDVASHFQL 754

Query: 121 KCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMA 180
           KC YD D YPSAE+GLL+GCFFHGLDP+EELVHSI+TREI+ RSSRGLSEPGTLFKNLMA
Sbjct: 755 KCFYDKDDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGLSEPGTLFKNLMA 814

Query: 181 ILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGDKTRYLFPAGEPVGVLAATSMSNPAYKAV 240
           ILRDVV+CYDGTVRNVCSNSIIQFEYG+++GD  ++LFPAGEPVGVLAATSMSNPAYKAV
Sbjct: 815 ILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLAATSMSNPAYKAV 874

Query: 241 LDASPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLR 300
           LDASPSS+ SW  MKEILLCKVNFRNEP DRRVILYLNDCDCGR YCRENAAY+V+NQLR
Sbjct: 875 LDASPSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCRENAAYLVQNQLR 934

Query: 301 KVSLKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDEV 339
           KVSLKD A+DFIVEYQQQR+R     DAGLV HI L EV
Sbjct: 935 KVSLKDAALDFIVEYQQQRRRRDGTEDAGLVCHIRLKEV 973


>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
            chr5:3060764-3075383 | 20130731
          Length = 1519

 Score = 89.0 bits (219), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 21/215 (9%)

Query: 134  YGLLRGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVCYDGTV 193
            + ++   F  GL+P E  VHS++ R+     +  L  PGTL + LM  +RD+   YDGTV
Sbjct: 803  HAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADL--PGTLTRRLMFFMRDMYDAYDGTV 860

Query: 194  RNVCSNSIIQFEYGVKAGDKTRYLFP----AGEPVGVLAATSMSNPAYKA------VLDA 243
            RN+  N +IQF Y  +        F      GEPVG L+A ++S  AY A      +L+A
Sbjct: 861  RNLYGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEAAYSALSQPISLLEA 920

Query: 244  SPSSSCSWELMKEILLCKVNFRNEPIDRRVILYLNDCDCGRRYCRENAAYIVKNQLRKVS 303
            SP  +     +K +L C    R +  D+ V L+L++    +R   E AA  VKN L +  
Sbjct: 921  SPLLN-----LKNVLEC--GSRKKGGDQTVSLFLSEKIGKQRNGFEYAALEVKNYLERYM 973

Query: 304  LKDTAVDFIVEYQQQRKREGSETDAGLVGHIHLDE 338
              +     ++ +  Q   +   +    V H HLD+
Sbjct: 974  FSNIVSTVMIIFTPQHCSQVKYSP--WVCHFHLDK 1006


>Medtr5g023020.1 | DNA-directed RNA polymerase | HC |
           chr5:9130153-9139413 | 20130731
          Length = 1834

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 8/169 (4%)

Query: 44  YNELVAQQLEKHMQDIELPAIKFVSKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRG 103
           +   V Q L +   D    A K +S+S+ L  M+ + SK +   ++Q    +GQQ  V G
Sbjct: 732 FENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEG 790

Query: 104 RLYSKGLLEDVASHFKLKCDYDGDGYPSAEYGLLRGCFFHGLDPFEELVHSISTREIMVR 163
           +    G ++    HF        D Y     G +   +  GL P E   H++  RE ++ 
Sbjct: 791 KRIPFGFIDRTLPHFT------KDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLID 844

Query: 164 SSRGLSEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGVKAGD 212
           ++   SE G + + L+  + D++V YDGTVRN   + +IQF YG    D
Sbjct: 845 TAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGD-VIQFLYGEDGMD 892