Miyakogusa Predicted Gene

Lj0g3v0103389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103389.1 Non Characterized Hit- tr|I1I4F0|I1I4F0_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,38.6,0.003,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; RNA
recognition motif,RNA recognition motif domain;,CUFF.5853.1
         (83 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   170   3e-43
Medtr1g096170.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    68   2e-12
Medtr1g096170.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    68   2e-12
Medtr1g097280.1 | cleavage stimulating factor, putative | HC | c...    52   1e-07
Medtr6g040190.1 | polyadenylate-binding protein | LC | chr6:1440...    50   4e-07
Medtr3g102040.1 | polyadenylate-binding protein | HC | chr3:4701...    50   5e-07
Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein...    49   7e-07
Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein...    49   7e-07
Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    49   7e-07
Medtr4g085540.1 | polyadenylate-binding protein | HC | chr4:3341...    49   9e-07
Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC | chr7:43324307-...    48   2e-06
Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like pro...    47   3e-06
Medtr1889s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protei...    47   3e-06
Medtr1g019150.1 | polyadenylate-binding protein | HC | chr1:5708...    47   4e-06
Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein...    47   4e-06
Medtr1g061870.1 | polyadenylate-binding plant protein, putative ...    46   6e-06
Medtr4g122650.1 | flowering time control FCA-like protein | HC |...    46   7e-06
Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    46   7e-06
Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein...    46   7e-06
Medtr8g107310.1 | eukaryotic translation initiation factor 3 sub...    46   7e-06

>Medtr3g065190.1 | RNA-binding (RRM/RBD/RNP motif) family protein
          | HC | chr3:29411645-29406062 | 20130731
          Length = 379

 Score =  170 bits (430), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/81 (97%), Positives = 81/81 (100%)

Query: 1  MTTRIAPGVGANLLGQHAAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDR 60
          MTTRIAPGVGANLLGQH+AERNQDATAYVGNLDPQI+EELLWELFVQAGPVVNVYVPKDR
Sbjct: 1  MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60

Query: 61 VTNQHQGYGFVEFRSEEDADY 81
          VTNQHQGYGFVEFRSEEDADY
Sbjct: 61 VTNQHQGYGFVEFRSEEDADY 81


>Medtr1g096170.2 | RNA recognition motif, a.k.a. RRM, RBD protein
          | HC | chr1:43247515-43243766 | 20130731
          Length = 205

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 45/61 (73%)

Query: 22 NQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADY 81
          N   T Y+GNLD ++T+ +L+++ +QAG VV++++PKD+ + + +G+ F E+ +EE ADY
Sbjct: 4  NSSCTVYIGNLDERVTDRILYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADY 63

Query: 82 V 82
           
Sbjct: 64 A 64


>Medtr1g096170.1 | RNA recognition motif, a.k.a. RRM, RBD protein
          | HC | chr1:43247569-43243736 | 20130731
          Length = 200

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 45/61 (73%)

Query: 22 NQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADY 81
          N   T Y+GNLD ++T+ +L+++ +QAG VV++++PKD+ + + +G+ F E+ +EE ADY
Sbjct: 4  NSSCTVYIGNLDERVTDRILYDILIQAGRVVDLHIPKDKESEKPKGFAFAEYETEEIADY 63

Query: 82 V 82
           
Sbjct: 64 A 64


>Medtr1g097280.1 | cleavage stimulating factor, putative | HC |
          chr1:43879642-43873268 | 20130731
          Length = 572

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 18 AAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEE 77
          AA ++Q  T +VGN+    TEE L E+  + GPV++  +  DR T + +GYGF E+  EE
Sbjct: 22 AAPQSQHRTVFVGNIPYDATEEQLKEICREVGPVISFRLVTDRETGKPKGYGFCEYTDEE 81

Query: 78 DA 79
           A
Sbjct: 82 TA 83


>Medtr6g040190.1 | polyadenylate-binding protein | LC |
          chr6:14408733-14404765 | 20130731
          Length = 623

 Score = 50.1 bits (118), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 40/62 (64%)

Query: 18 AAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEE 77
          +A R ++++ YVG+L   + +  L++LF Q  PV++V V +D++T    GYG+V + +  
Sbjct: 18 SAGRFENSSLYVGDLQGNVNDAQLYDLFSQIAPVISVRVCRDQMTQSSLGYGYVNYSNAR 77

Query: 78 DA 79
          DA
Sbjct: 78 DA 79


>Medtr3g102040.1 | polyadenylate-binding protein | HC |
          chr3:47012095-47003272 | 20130731
          Length = 622

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 26 TAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
          + YVG+LD  +T+  L++LF Q G VV+V + +D  + Q  GYG+V F +  DA
Sbjct: 25 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDA 78


>Medtr5g017280.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:6293125-6297976 | 20130731
          Length = 397

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 13  LLGQHAAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVE 72
           + G+    R      +VG L P+   E L + F + G + +VY+P+D     H+G+GFV 
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272

Query: 73  FRSEEDADYVS 83
           F  E  AD VS
Sbjct: 273 FADEGVADRVS 283


>Medtr5g017280.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:6293125-6297976 | 20130731
          Length = 397

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 13  LLGQHAAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVE 72
           + G+    R      +VG L P+   E L + F + G + +VY+P+D     H+G+GFV 
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272

Query: 73  FRSEEDADYVS 83
           F  E  AD VS
Sbjct: 273 FADEGVADRVS 283


>Medtr5g017280.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:6293125-6298060 | 20130731
          Length = 397

 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 13  LLGQHAAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVE 72
           + G+    R      +VG L P+   E L + F + G + +VY+P+D     H+G+GFV 
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272

Query: 73  FRSEEDADYVS 83
           F  E  AD VS
Sbjct: 273 FADEGVADRVS 283


>Medtr4g085540.1 | polyadenylate-binding protein | HC |
          chr4:33416965-33423437 | 20130731
          Length = 654

 Score = 49.3 bits (116), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%)

Query: 26 TAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
          + YVG+LD  +T+  L++LF Q G VV+V V +D  T +  GYG+V + + +DA
Sbjct: 35 SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDA 88


>Medtr7g106440.1 | 33 kDa ribonucleoprotein | HC |
           chr7:43324307-43322087 | 20130731
          Length = 318

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 35/52 (67%)

Query: 28  YVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
           YVGNL   +T   L ++F +AG VV+V +  DR+T++ +G+ FV  +S E+A
Sbjct: 112 YVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEA 163


>Medtr5g044970.1 | peptidyl-prolyl cis-trans isomerase E-like
          protein | HC | chr5:19719748-19722666 | 20130731
          Length = 170

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 32/57 (56%)

Query: 23 QDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
          Q  T YVG L  ++ E +L   F+  G + +V  P D+ T +H+ +GFV F   EDA
Sbjct: 8  QKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDA 64


>Medtr1889s0010.1 | RNA recognition motif, a.k.a. RRM, RBD protein
          | LC | scaffold1889:421-1063 | 20130731
          Length = 88

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%)

Query: 23 QDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
          ++A+ YVG+L+ ++ E  L+E   Q G V++V V +D++T    GYG+V F +  D 
Sbjct: 18 ENASLYVGDLERKVNEAQLYEPLYQIGHVISVRVCRDQMTQSSLGYGYVNFSNARDG 74


>Medtr1g019150.1 | polyadenylate-binding protein | HC |
          chr1:5708406-5713691 | 20130731
          Length = 647

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query: 26 TAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
          + YVG+L+  + +  L++LF Q G VV+V V +D  T +  GYG+V F + +DA
Sbjct: 33 SLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDA 86


>Medtr5g017280.4 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:6293125-6298060 | 20130731
          Length = 373

 Score = 47.0 bits (110), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 37/71 (52%)

Query: 13  LLGQHAAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVE 72
           + G+    R      +VG L P+   E L + F + G + +VY+P+D     H+G+GFV 
Sbjct: 213 IYGRGEPRRRISKKIFVGRLPPEANSEDLRQYFGRFGRIEDVYIPRDPKRTGHRGFGFVT 272

Query: 73  FRSEEDADYVS 83
           F  E  AD VS
Sbjct: 273 FADEGVADRVS 283


>Medtr1g061870.1 | polyadenylate-binding plant protein, putative |
           HC | chr1:27029234-27025443 | 20130731
          Length = 522

 Score = 46.2 bits (108), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 33/52 (63%), Gaps = 1/52 (1%)

Query: 28  YVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
           YV NLDP +TE+ L E F   G +V++ + KD    Q +G+GFV + S +DA
Sbjct: 197 YVKNLDPVVTEKHLGEKFSSFGKIVSLAIKKDE-NGQSKGFGFVNYDSPDDA 247


>Medtr4g122650.1 | flowering time control FCA-like protein | HC |
           chr4:50587410-50576809 | 20130731
          Length = 737

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query: 25  ATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDAD 80
           A  +VG++    TEE +  LF + G VV V + KDR T QHQG  F+++ + E+AD
Sbjct: 88  AKLFVGSVPRTATEEDIRPLFEEHGNVVEVALIKDRKTGQHQGCCFIKYATSEEAD 143


>Medtr1g056520.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:24700218-24705084 | 20130731
          Length = 311

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 19  AERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
           AE  Q    +VGNL   ++   L +LF +AG VV+V +  D +TN+ +G+ FV   + ED
Sbjct: 102 AESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVED 161

Query: 79  AD 80
           A+
Sbjct: 162 AE 163


>Medtr1g056520.2 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr1:24700221-24703822 | 20130731
          Length = 311

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%)

Query: 19  AERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
           AE  Q    +VGNL   ++   L +LF +AG VV+V +  D +TN+ +G+ FV   + ED
Sbjct: 102 AESTQSRRLFVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGNVED 161

Query: 79  AD 80
           A+
Sbjct: 162 AE 163


>Medtr8g107310.1 | eukaryotic translation initiation factor 3
           subunit G | HC | chr8:45339610-45341085 | 20130731
          Length = 292

 Score = 46.2 bits (108), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/65 (41%), Positives = 32/65 (49%)

Query: 15  GQHAAERNQDATAYVGNLDPQITEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFR 74
           G     RN + +  V NL     E  L ELF   G V  VYV  D+ T   +G+GFV F 
Sbjct: 201 GSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGMSRGFGFVNFV 260

Query: 75  SEEDA 79
           S EDA
Sbjct: 261 SREDA 265