Miyakogusa Predicted Gene

Lj0g3v0103099.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103099.1 tr|B9HWJ1|B9HWJ1_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_566638 PE=4
SV=1,44.05,0.0000000004,Bromo adjacent homology domain,Bromo adjacent
homology (BAH) domain; BAH,Bromo adjacent homology (BA,gene.g7816.t1.1
         (444 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g058500.1 | bromo adjacent-like domain protein | HC | chr3...   694   0.0  
Medtr2g026390.1 | bromo adjacent-like domain protein | HC | chr2...   343   2e-94
Medtr5g055210.1 | bromo adjacent-like domain protein | HC | chr5...   217   2e-56
Medtr5g055210.2 | bromo adjacent-like domain protein | HC | chr5...   164   2e-40
Medtr5g055210.4 | bromo adjacent-like domain protein | HC | chr5...   106   5e-23
Medtr5g055210.5 | bromo adjacent-like domain protein | HC | chr5...   106   5e-23
Medtr5g055210.3 | bromo adjacent-like domain protein | HC | chr5...   106   5e-23
Medtr3g462210.1 | hypothetical protein | LC | chr3:24830480-2482...    66   6e-11

>Medtr3g058500.1 | bromo adjacent-like domain protein | HC |
           chr3:23246301-23250734 | 20130731
          Length = 662

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/444 (76%), Positives = 373/444 (84%), Gaps = 12/444 (2%)

Query: 1   MTVNDRCFVEWKEQFVSQERGNRVVHYYLKDSGGESVLAVVGTERSVRHMCYVAAEEFLE 60
           M+++D CFVEWKE FVSQERG+R+VHYYLKDS GES LAVVGTERSVRHMCYV AEEFLE
Sbjct: 1   MSIDDPCFVEWKEHFVSQERGHRIVHYYLKDSAGESFLAVVGTERSVRHMCYVIAEEFLE 60

Query: 61  ICGKEGCVPAGFKWRSRREVVDWLTSMLSKQLVQGERSGSPGHNLALPHETSNGCENDGT 120
           ICG E  +P GFKWRSRREVVDWLTSMLSKQ ++ +RS  P HNLAL H+ +NG   +  
Sbjct: 61  ICGME--IPPGFKWRSRREVVDWLTSMLSKQHLEEDRSVWPVHNLALAHKIANGSVKE-- 116

Query: 121 ALSAQIADHKDILLSNCKLSTSDIVWSGVAWTCGKQLKHYPAFCRNGIKIAIQSFVFVMG 180
            +SAQ+ D KDI  SN KLS SDIVWSG+AWTCGKQLKHYPAFCRNGI+I IQSFVFVMG
Sbjct: 117 -VSAQMVDDKDIPKSNSKLSNSDIVWSGLAWTCGKQLKHYPAFCRNGIQIGIQSFVFVMG 175

Query: 181 KEEKHFVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAE 240
             E H+VAYLEDMYEDRRGQKKVKVRWFHHNQEVKGAIPVRN HPREVFITSYSQVISAE
Sbjct: 176 NGENHYVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGAIPVRNTHPREVFITSYSQVISAE 235

Query: 241 CVDGLATVLTREHYERCMPYFSPTSTDRIHLCFRQFKGNKVKPFDLSKLRGYYAQSVLSC 300
           CVDG A VLTREH+E+C PYFSP+STDRIHLCFRQ KGNKVKPFDLSKLRGYY Q  LS 
Sbjct: 236 CVDGPAAVLTREHFEKCTPYFSPSSTDRIHLCFRQLKGNKVKPFDLSKLRGYYTQPALSS 295

Query: 301 LHLDSNQKPEK-SNNLAREDEDLGVGDDAKLGAKRSRSDRGSPQSRIGRRGVRKLIRSEQ 359
           L +D+    E  SN+L  EDEDL VGDDAK GAKRSRS         GR GVRKLIRS  
Sbjct: 296 LRVDTIHNTESHSNSLTGEDEDLDVGDDAKRGAKRSRSVTN------GREGVRKLIRSNP 349

Query: 360 MMVHEMFQVVNYGSPDQRLLSLKQIEFQPWNNPTYKVDDKIELLCQDSGIRGCWFRCTVV 419
           MM ++ FQVVNY  PD+RLLSLK+++ +PW NPTYKVDDKIE+L QDSGIRGCWFRCT+V
Sbjct: 350 MMGYQTFQVVNYARPDRRLLSLKKVDCKPWFNPTYKVDDKIEVLSQDSGIRGCWFRCTIV 409

Query: 420 QVARKQLKVQYDDVQDEDGSGNLQ 443
           QVARKQLKVQYDDVQDEDGSGNL+
Sbjct: 410 QVARKQLKVQYDDVQDEDGSGNLE 433


>Medtr2g026390.1 | bromo adjacent-like domain protein | HC |
           chr2:9533653-9528320 | 20130731
          Length = 700

 Score =  343 bits (880), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 195/438 (44%), Positives = 262/438 (59%), Gaps = 22/438 (5%)

Query: 5   DRCFVEWKEQFVSQERGNRVVHYYLKDSGGESVLAVVGTERSVRHMCYVAAEEFLEICGK 64
           D  FV W+EQ + QERGNRV+H+YL+   G+SVLAVVGTERSVRHM YV  ++FL   G 
Sbjct: 7   DAVFVSWEEQVICQERGNRVIHFYLRHMSGDSVLAVVGTERSVRHMMYVVPQQFLMDYGS 66

Query: 65  EGCVPAGFKWRSRREVVDWLTSMLSKQLVQGERSGSPGHNLALPHETSNGCENDGTALSA 124
              V   +KWR+RREVVDWL  ++S+   +  R+G+   + A+     +  +     ++A
Sbjct: 67  TNVV---YKWRARREVVDWLNHLVSRN--RSHRNGTLLDDSAIAAGLGS-LDTFADGINA 120

Query: 125 QIADHKDILLSN-CKLSTSDIVWSGVAWTCGKQLKHYPAFCRNGIKIAIQSFVFVMGKEE 183
                 D L+S    + +SDIVWSG +  C KQLKHY  F R G  I + SFV++M +EE
Sbjct: 121 NNRKIPDKLISKKLNIQSSDIVWSGASSFCAKQLKHYSGFDRKGTTIYVHSFVYIMAEEE 180

Query: 184 KHFVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVD 243
            H++ YLEDMYED++ QK+VKVRWFH  QEVK  IP  + H  EVFIT   QVISAEC++
Sbjct: 181 NHYLGYLEDMYEDKKRQKRVKVRWFHRGQEVKHVIPELDLHEGEVFITPNVQVISAECIN 240

Query: 244 GLATVLTREHYERCMPYFSPTSTDRIHLCFRQFKGNKVKPFDLSKLRGYYAQSVLSCLHL 303
           G ATVLT +HYE+       TS+  IH+C RQ K NK+KPF L+KL GY  Q +LS L+ 
Sbjct: 241 GPATVLTPKHYEKYKAELLRTSSSEIHVCSRQLKNNKLKPFALTKLSGYSNQPILSGLNC 300

Query: 304 DSNQKPEKSNNLAREDEDLGVGDDAKLGAKRSRSDRGSPQSRIGRRGVRKLIRSEQMMVH 363
            S   P++  +  + ++      D  L +   R +R S +  +  +G   L  S  M  +
Sbjct: 301 PS--LPKRKADCPKFEDGGNFTQDDSLRSSNKR-NRSSVEYLVAEKGSSGLQNSSLM--N 355

Query: 364 EMFQVVNYGSPDQRLLSLKQIE------FQPWNNPTYKVDDKIELLCQDSGIRGCWFRCT 417
           EM      G P    L LK          +P     +KV+DK+E L QDSGIRGCWFRCT
Sbjct: 356 EMPN----GVPKYPSLKLKLSRNTMGKGIEPKPELPFKVNDKVEFLSQDSGIRGCWFRCT 411

Query: 418 VVQVARKQLKVQYDDVQD 435
           ++  + K+LKV YDD+ D
Sbjct: 412 ILYASHKKLKVLYDDIMD 429


>Medtr5g055210.1 | bromo adjacent-like domain protein | HC |
           chr5:22745712-22741441 | 20130731
          Length = 685

 Score =  217 bits (553), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 151/471 (32%), Positives = 234/471 (49%), Gaps = 90/471 (19%)

Query: 8   FVEWKEQFVSQERGNRVVHYYLKDSGGESVLAVVGTERSVRHMCYVAAEEFLEICGKEGC 67
           +V W+E+FVS ++G R V Y+LK   GE  LA++G E+S RHM Y  A        +   
Sbjct: 23  YVTWEEKFVSMDKGRREVRYFLKKKNGELDLALIGKEKSSRHMSYHYA-------IRNSS 75

Query: 68  VPAGFKWRSRREVVDWLTSMLSKQLVQGERSGSPGHNLALPHETSNGCENDGTALSAQIA 127
               F+ +SRREVV+WL S++       + S S   N+A+     +G E +  AL     
Sbjct: 76  FAPFFRLKSRREVVNWLDSIV-------QDSSSRDANMAV---REHGYEPEIGALK---- 121

Query: 128 DHKDILLSNCKLSTSDIVWSGVAWTCGKQLKHYPAFCRNGIKIAIQSFVFVMGKEEKHFV 187
           D++ + L+ C   + +  W G+ WTC K+  HY AF ++G +I++  FVFV+ +E K  V
Sbjct: 122 DNQLLSLNPC---SKEFTWLGLPWTCRKRRNHYQAFRKDGFQISVYDFVFVLAEENKRLV 178

Query: 188 AYLEDMYEDRRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVDGLAT 247
           AYLEDMYE  +G K V VRWFH   EV   +P  +   REV+ + Y Q +S EC+DGL +
Sbjct: 179 AYLEDMYEGSKGNKMVVVRWFHRIDEVGFVLP-HSFSEREVYFSPYLQRLSIECIDGLTS 237

Query: 248 VLTREHYERCMPYFSPTSTDRIHLCFRQFKGNKVKPFDLSKLRGYYAQSVL--------- 298
           VL+ +HY +     +  +    ++C ++F  + VK FD++++ GY+ Q +L         
Sbjct: 238 VLSPQHYAKFRNK-ARHARPEPYVCSKKFGKDDVKDFDITQMEGYWKQEILKQMYPHVES 296

Query: 299 ----------------SCLHLDSNQKPEKSNNLAREDEDLGVG---------DDAKLGAK 333
                             LH  S  +P+K     + D    V           + K+ AK
Sbjct: 297 NSSGSSGKSDDGPELEENLHSSSAIRPKKKQRCTKVDGKDAVELGSLQLEKLSNCKIDAK 356

Query: 334 RSRSDRGSPQSRIGRRGVRKLIRSEQMMVHEMFQVVNYGSPDQRLLSLKQIEFQPWNNPT 393
            S  ++   +  +   G  KL   ++   +E  Q +  GS                    
Sbjct: 357 TSSGNK--LEGSVKLVGTTKLATIKE--TNEASQYLAVGS-------------------- 392

Query: 394 YKVDDKIELLCQDSGIRGCWFRCTVVQVARKQLKVQYDDVQD-EDGSGNLQ 443
                 +E+L QDSGIRGCWFR +V++  + ++KVQY D+QD ED + NL+
Sbjct: 393 -----NVEVLSQDSGIRGCWFRASVIKRHKDKVKVQYHDIQDAEDEANNLE 438


>Medtr5g055210.2 | bromo adjacent-like domain protein | HC |
           chr5:22745706-22741499 | 20130731
          Length = 580

 Score =  164 bits (414), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 169/325 (52%), Gaps = 8/325 (2%)

Query: 125 QIADHKDILLSNCKLSTSDIVWSGVAWTCGKQLKHYPAFCRNGIKIAIQSFVFVMGKEEK 184
           +I   KD  L +    + +  W G+ WTC K+  HY AF ++G +I++  FVFV+ +E K
Sbjct: 11  EIGALKDNQLLSLNPCSKEFTWLGLPWTCRKRRNHYQAFRKDGFQISVYDFVFVLAEENK 70

Query: 185 HFVAYLEDMYEDRRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVDG 244
             VAYLEDMYE  +G K V VRWFH   EV   +P  +   REV+ + Y Q +S EC+DG
Sbjct: 71  RLVAYLEDMYEGSKGNKMVVVRWFHRIDEVGFVLP-HSFSEREVYFSPYLQRLSIECIDG 129

Query: 245 LATVLTREHYERCMPYFSPTSTDRIHLCFRQFKGNKVKPFDLSKLRGYYAQSVLSCL--H 302
           L +VL+ +HY +     +  +    ++C ++F  + VK FD++++ GY+ Q +L  +  H
Sbjct: 130 LTSVLSPQHYAK-FRNKARHARPEPYVCSKKFGKDDVKDFDITQMEGYWKQEILKQMYPH 188

Query: 303 LDSNQKPEKSNNLAREDEDLGVGDDAKLGAKRSRSDRGSPQSRIGRRGVRKLIRSEQMMV 362
           ++SN       +    + +  +   + +  K+ +             G  +L +     +
Sbjct: 189 VESNSSGSSGKSDDGPELEENLHSSSAIRPKKKQRCTKVDGKDAVELGSLQLEKLSNCKI 248

Query: 363 HEMFQVVNYGSPDQRLLSLKQIEFQPWNNPTYK---VDDKIELLCQDSGIRGCWFRCTVV 419
                  N      +L+   ++      N   +   V   +E+L QDSGIRGCWFR +V+
Sbjct: 249 DAKTSSGNKLEGSVKLVGTTKLATIKETNEASQYLAVGSNVEVLSQDSGIRGCWFRASVI 308

Query: 420 QVARKQLKVQYDDVQD-EDGSGNLQ 443
           +  + ++KVQY D+QD ED + NL+
Sbjct: 309 KRHKDKVKVQYHDIQDAEDEANNLE 333


>Medtr5g055210.4 | bromo adjacent-like domain protein | HC |
           chr5:22745706-22741441 | 20130731
          Length = 502

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 129/287 (44%), Gaps = 68/287 (23%)

Query: 193 MYEDRRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVDGLATVLTRE 252
           MYE  +G K V VRWFH   EV   +P  +   REV+ + Y Q +S EC+DGL +VL+ +
Sbjct: 1   MYEGSKGNKMVVVRWFHRIDEVGFVLP-HSFSEREVYFSPYLQRLSIECIDGLTSVLSPQ 59

Query: 253 HYERCMPYFSPTSTDRIHLCFRQFKGNKVKPFDLSKLRGYYAQSVL-------------- 298
           HY +     +  +    ++C ++F  + VK FD++++ GY+ Q +L              
Sbjct: 60  HYAK-FRNKARHARPEPYVCSKKFGKDDVKDFDITQMEGYWKQEILKQMYPHVESNSSGS 118

Query: 299 -----------SCLHLDSNQKPEKSNNLAREDEDLGVG---------DDAKLGAKRSRSD 338
                        LH  S  +P+K     + D    V           + K+ AK S  +
Sbjct: 119 SGKSDDGPELEENLHSSSAIRPKKKQRCTKVDGKDAVELGSLQLEKLSNCKIDAKTSSGN 178

Query: 339 RGSPQSRIGRRGVRKLIRSEQM-MVHEMFQVVNYGSPDQRLLSLKQIEFQPWNNPTYKVD 397
           +          G  KL+ + ++  + E  +   Y                        V 
Sbjct: 179 K--------LEGSVKLVGTTKLATIKETNEASQY----------------------LAVG 208

Query: 398 DKIELLCQDSGIRGCWFRCTVVQVARKQLKVQYDDVQD-EDGSGNLQ 443
             +E+L QDSGIRGCWFR +V++  + ++KVQY D+QD ED + NL+
Sbjct: 209 SNVEVLSQDSGIRGCWFRASVIKRHKDKVKVQYHDIQDAEDEANNLE 255


>Medtr5g055210.5 | bromo adjacent-like domain protein | HC |
           chr5:22744621-22741499 | 20130731
          Length = 502

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 129/287 (44%), Gaps = 68/287 (23%)

Query: 193 MYEDRRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVDGLATVLTRE 252
           MYE  +G K V VRWFH   EV   +P  +   REV+ + Y Q +S EC+DGL +VL+ +
Sbjct: 1   MYEGSKGNKMVVVRWFHRIDEVGFVLP-HSFSEREVYFSPYLQRLSIECIDGLTSVLSPQ 59

Query: 253 HYERCMPYFSPTSTDRIHLCFRQFKGNKVKPFDLSKLRGYYAQSVL-------------- 298
           HY +     +  +    ++C ++F  + VK FD++++ GY+ Q +L              
Sbjct: 60  HYAK-FRNKARHARPEPYVCSKKFGKDDVKDFDITQMEGYWKQEILKQMYPHVESNSSGS 118

Query: 299 -----------SCLHLDSNQKPEKSNNLAREDEDLGVG---------DDAKLGAKRSRSD 338
                        LH  S  +P+K     + D    V           + K+ AK S  +
Sbjct: 119 SGKSDDGPELEENLHSSSAIRPKKKQRCTKVDGKDAVELGSLQLEKLSNCKIDAKTSSGN 178

Query: 339 RGSPQSRIGRRGVRKLIRSEQM-MVHEMFQVVNYGSPDQRLLSLKQIEFQPWNNPTYKVD 397
           +          G  KL+ + ++  + E  +   Y                        V 
Sbjct: 179 K--------LEGSVKLVGTTKLATIKETNEASQY----------------------LAVG 208

Query: 398 DKIELLCQDSGIRGCWFRCTVVQVARKQLKVQYDDVQD-EDGSGNLQ 443
             +E+L QDSGIRGCWFR +V++  + ++KVQY D+QD ED + NL+
Sbjct: 209 SNVEVLSQDSGIRGCWFRASVIKRHKDKVKVQYHDIQDAEDEANNLE 255


>Medtr5g055210.3 | bromo adjacent-like domain protein | HC |
           chr5:22745706-22741499 | 20130731
          Length = 502

 Score =  106 bits (264), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 129/287 (44%), Gaps = 68/287 (23%)

Query: 193 MYEDRRGQKKVKVRWFHHNQEVKGAIPVRNPHPREVFITSYSQVISAECVDGLATVLTRE 252
           MYE  +G K V VRWFH   EV   +P  +   REV+ + Y Q +S EC+DGL +VL+ +
Sbjct: 1   MYEGSKGNKMVVVRWFHRIDEVGFVLP-HSFSEREVYFSPYLQRLSIECIDGLTSVLSPQ 59

Query: 253 HYERCMPYFSPTSTDRIHLCFRQFKGNKVKPFDLSKLRGYYAQSVL-------------- 298
           HY +     +  +    ++C ++F  + VK FD++++ GY+ Q +L              
Sbjct: 60  HYAK-FRNKARHARPEPYVCSKKFGKDDVKDFDITQMEGYWKQEILKQMYPHVESNSSGS 118

Query: 299 -----------SCLHLDSNQKPEKSNNLAREDEDLGVG---------DDAKLGAKRSRSD 338
                        LH  S  +P+K     + D    V           + K+ AK S  +
Sbjct: 119 SGKSDDGPELEENLHSSSAIRPKKKQRCTKVDGKDAVELGSLQLEKLSNCKIDAKTSSGN 178

Query: 339 RGSPQSRIGRRGVRKLIRSEQM-MVHEMFQVVNYGSPDQRLLSLKQIEFQPWNNPTYKVD 397
           +          G  KL+ + ++  + E  +   Y                        V 
Sbjct: 179 K--------LEGSVKLVGTTKLATIKETNEASQY----------------------LAVG 208

Query: 398 DKIELLCQDSGIRGCWFRCTVVQVARKQLKVQYDDVQD-EDGSGNLQ 443
             +E+L QDSGIRGCWFR +V++  + ++KVQY D+QD ED + NL+
Sbjct: 209 SNVEVLSQDSGIRGCWFRASVIKRHKDKVKVQYHDIQDAEDEANNLE 255


>Medtr3g462210.1 | hypothetical protein | LC |
          chr3:24830480-24829940 | 20130731
          Length = 83

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 39/50 (78%), Gaps = 2/50 (4%)

Query: 50 MCYVAAEEFLEICGKEGCVPAGFKWRSRREVVDWLTSMLSKQLVQGERSG 99
          MC V ++EFLEIC  E  +  GFKWRSRREVVDW TSMLSKQ ++ +RSG
Sbjct: 1  MCNVVSKEFLEICRME--ILPGFKWRSRREVVDWPTSMLSKQHLREDRSG 48



 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/26 (88%), Positives = 25/26 (96%)

Query: 419 VQVARKQLKVQYDDVQDEDGSGNLQV 444
           +QVARKQLKVQYDDVQDED SGNL+V
Sbjct: 49  LQVARKQLKVQYDDVQDEDESGNLEV 74