Miyakogusa Predicted Gene

Lj0g3v0103049.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0103049.1 Non Characterized Hit- tr|A3BAF3|A3BAF3_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,40,1e-18,seg,NULL; DUF4228,Protein of unknown function
DUF4228,CUFF.5821.1
         (216 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g079610.1 | plastid movement impaired protein | HC | chr5:...   253   1e-67
Medtr3g067730.1 | plastid movement impaired protein | HC | chr3:...   214   7e-56
Medtr4g085100.1 | plastid movement impaired protein | HC | chr4:...   163   9e-41
Medtr1g030740.1 | plastid movement impaired protein | HC | chr1:...   154   5e-38

>Medtr5g079610.1 | plastid movement impaired protein | HC |
           chr5:34041796-34038507 | 20130731
          Length = 211

 Score =  253 bits (645), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 141/221 (63%), Positives = 162/221 (73%), Gaps = 15/221 (6%)

Query: 1   MGNTIGRSKRAKVMKVDGETFKVKMPATANDVVKDYPGHVLLDSQAVKHFGLRARPLEPN 60
           MGNTIG+SK+AK+MK+DGETFKVK P T+N+VVK+YP HVLLDSQAVKHFGLRA+PLEPN
Sbjct: 1   MGNTIGKSKKAKIMKIDGETFKVKTPTTSNEVVKNYPNHVLLDSQAVKHFGLRAKPLEPN 60

Query: 61  QELKPKKIYFVVELPKVQEPEEVKTAXXXXXXXXXXXXGIQGMKAKDRLELLMLSKRSVS 120
           QELKPKKIYF+V+LPK+ EPE  KT+            GI+ + AK RLELLMLSKRSVS
Sbjct: 61  QELKPKKIYFLVDLPKI-EPENEKTS----LPRRVRSSGIRNVDAKGRLELLMLSKRSVS 115

Query: 121 DLALVRQPTTNVG----LDGPMRVKMRLPRAQLEKLMEESNDGTEVAEKIMRLYAXXXXX 176
           D++LV+ P +N+G     DG MRVKMRLP+AQLEKLMEESNDG+EVAEKIM LY      
Sbjct: 116 DISLVK-PPSNLGFDRPFDGSMRVKMRLPKAQLEKLMEESNDGSEVAEKIMSLYMGGGGD 174

Query: 177 XXXXXXXXXXXSHHHGHKPRGKRVSFSPME-NEVLEEAVPQ 216
                            KPRGKRVSFSPME  E   EA PQ
Sbjct: 175 AAEHDSDVL----RQNRKPRGKRVSFSPMEIEESPVEAAPQ 211


>Medtr3g067730.1 | plastid movement impaired protein | HC |
           chr3:30371487-30369807 | 20130731
          Length = 217

 Score =  214 bits (544), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 126/227 (55%), Positives = 151/227 (66%), Gaps = 24/227 (10%)

Query: 1   MGNTI-GRSKRAKVMKVDGETFKVKMPATANDVVKDYPGHVLLDSQAVKHFGLRARPLEP 59
           MGN + GR+K+AKVMK+DGETFK+K PA ANDVVK YPGH LLDSQAVKHFGLRA+PLEP
Sbjct: 1   MGNVMMGRTKKAKVMKIDGETFKLKTPAKANDVVKHYPGHALLDSQAVKHFGLRAKPLEP 60

Query: 60  NQELKPKKIYFVVELPKVQE---PEEVKTAXXXXXXXXXXXXGIQGMKAKDRLELLMLSK 116
           +Q+LK KKIYF+VELPKVQ    P  V+++               GM A +RL+ LMLSK
Sbjct: 61  HQQLKAKKIYFLVELPKVQSQPLPRRVRSSGLHPSC---------GMNATERLDFLMLSK 111

Query: 117 RSVSDLALVRQPTTNVGLDGP-------MRVKMRLPRAQLEKLMEESNDGTEVAEKIMRL 169
           RSVSDL  V++  +N+G DGP        RVKMR+P+AQL+KLMEES DG EVAEKI+ L
Sbjct: 112 RSVSDLPSVKR--SNLGDDGPGLVRDGSTRVKMRIPKAQLDKLMEESRDGAEVAEKIVSL 169

Query: 170 Y-AXXXXXXXXXXXXXXXXSHHHGHKPRGKRVSFSPM-ENEVLEEAV 214
           Y                     H  + R KRVSFSP+ E E+ EEA 
Sbjct: 170 YMGNNASVKGGGGGINEGKVEVHNQRSRRKRVSFSPVEEGEIHEEAT 216


>Medtr4g085100.1 | plastid movement impaired protein | HC |
           chr4:33286097-33284205 | 20130731
          Length = 210

 Score =  163 bits (413), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 96/222 (43%), Positives = 134/222 (60%), Gaps = 22/222 (9%)

Query: 1   MGNTIGRSKRAKVMKVDGETFKVKMPATANDVVKDYPGHVLLDSQAVKHFGLRARPLEPN 60
           MGNT G  K  KVMK+DGET K+K P  A +V+KD+PG VLLDS+AVKH+G+RA+ +E +
Sbjct: 1   MGNTFGSKKTTKVMKIDGETMKLKTPIKAGEVLKDHPGLVLLDSEAVKHYGVRAKVIEAH 60

Query: 61  QELKPKKIYFVVELPKVQEPEEVKTAXXXXXXXXXXXXGIQGMKAKDRLELLMLSKRSVS 120
           +EL+PK++YF+VELPK  +P  +++             GIQ M AKDRL+ L+L++RS S
Sbjct: 61  KELQPKRLYFLVELPKETKPRRIRS-------------GIQ-MSAKDRLDNLVLTRRSAS 106

Query: 121 DLALVRQPTTNVGL--------DGPMRVKMRLPRAQLEKLMEESNDGTEVAEKIMRLYAX 172
           DL++++Q   N            G +R+K+RLP+A++EKLM +  D  E AE IMRLY  
Sbjct: 107 DLSILKQSKMNDNSGELEGKENGGGVRLKVRLPKAEVEKLMRDCKDEAEAAEMIMRLYKA 166

Query: 173 XXXXXXXXXXXXXXXSHHHGHKPRGKRVSFSPMENEVLEEAV 214
                          +      PR KRVSF P     ++ AV
Sbjct: 167 SGKGEKETIVKESPRTPRTPRTPRQKRVSFMPSNEGGIQIAV 208


>Medtr1g030740.1 | plastid movement impaired protein | HC |
           chr1:10735971-10738895 | 20130731
          Length = 211

 Score =  154 bits (390), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 86/175 (49%), Positives = 116/175 (66%), Gaps = 20/175 (11%)

Query: 1   MGNTIGRSKRAKVMKVDGETFKVKMPATANDVVKDYPGHVLLDSQAVKHFGLRARPLEPN 60
           MGN++G  K  KVMK+DGETFK+K P  A +V+KD+PG VLL+S+ VKH+G+RA+PLE +
Sbjct: 1   MGNSLGGKKSTKVMKIDGETFKLKTPVKAGEVLKDHPGLVLLESEEVKHYGVRAKPLEAH 60

Query: 61  QELKPKKIYFVVELPKVQEPEEVKTAXXXXXXXXXXXXGIQGMKAKDRLELLMLSKRSVS 120
           +ELKPK++YF+VELPK                       +  M AKDRLE L L++RS S
Sbjct: 61  KELKPKRLYFLVELPK-------------ESRVTRRVRSVINMSAKDRLESLSLARRSAS 107

Query: 121 DLALVRQPTTN--VG----LDGPMRVKMRLPRAQLEKLMEESNDGTEVAEKIMRL 169
           DL +++ P  +  VG     +G +R+KMRLP+A +EKLM+ S D  E AEKIM L
Sbjct: 108 DLTIMK-PMNDFEVGKEDLTNGGVRLKMRLPKADVEKLMQSSKDEGEAAEKIMSL 161