Miyakogusa Predicted Gene

Lj0g3v0102959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0102959.1 CUFF.5815.1
         (167 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g005470.1 | NADP-dependent isocitrate dehydrogenase | HC |...   226   5e-60
Medtr5g077070.2 | NADP-dependent isocitrate dehydrogenase | HC |...   188   2e-48
Medtr5g077070.1 | NADP-dependent isocitrate dehydrogenase | HC |...   188   2e-48
Medtr2g062840.1 | NADP-dependent isocitrate dehydrogenase | HC |...   186   1e-47

>Medtr6g005470.1 | NADP-dependent isocitrate dehydrogenase | HC |
           chr6:768370-775713 | 20130731
          Length = 482

 Score =  226 bits (577), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 124/171 (72%), Positives = 132/171 (77%), Gaps = 15/171 (8%)

Query: 7   RKSATMFXXXXXXTLRNPNFLL-PSTPS----LTHDFPSHSLSFPNR-----LSLRCFAS 56
           R ++T+       +LRNPN LL  STPS    L H  P +SLSF N      + LRCFAS
Sbjct: 12  RLTSTLTMLSSSCSLRNPNNLLFHSTPSSSLFLPH--PPNSLSFHNHNHNPFIPLRCFAS 69

Query: 57  RATFHTIPVLNPIVEMDGDEMTRIIWKMIKDKLIFPYLDLNIKYFDLGVQNRDATDDRVT 116
               H   V NPIVEMDGDEMTRIIWKMIKDKLIFPYLDLNIKYFDLGV NRDAT+DRVT
Sbjct: 70  STPIH---VANPIVEMDGDEMTRIIWKMIKDKLIFPYLDLNIKYFDLGVLNRDATEDRVT 126

Query: 117 VESAEAALRYNVAVKCATITPDETRVKEFGLKSMWRSPNGTIRNILNGCYF 167
           VESAEA L+YNVAVKCATITPDETRVKEFGLKSMWRSPNGTIRNILNG  F
Sbjct: 127 VESAEATLKYNVAVKCATITPDETRVKEFGLKSMWRSPNGTIRNILNGTVF 177


>Medtr5g077070.2 | NADP-dependent isocitrate dehydrogenase | HC |
           chr5:32875308-32880347 | 20130731
          Length = 412

 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 95/108 (87%)

Query: 60  FHTIPVLNPIVEMDGDEMTRIIWKMIKDKLIFPYLDLNIKYFDLGVQNRDATDDRVTVES 119
           F  I V NPIVEMDGDEMTRIIWK IKDKLI P+++L+IKYFDLG+  RD TDD+VTVES
Sbjct: 3   FQKIKVANPIVEMDGDEMTRIIWKYIKDKLILPFVELDIKYFDLGLPYRDETDDKVTVES 62

Query: 120 AEAALRYNVAVKCATITPDETRVKEFGLKSMWRSPNGTIRNILNGCYF 167
           AEA L+YNVA+KCATITPDE RVKEFGLKSMWRSPNGTIRNILNG  F
Sbjct: 63  AEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVF 110


>Medtr5g077070.1 | NADP-dependent isocitrate dehydrogenase | HC |
           chr5:32875291-32880357 | 20130731
          Length = 412

 Score =  188 bits (478), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 87/108 (80%), Positives = 95/108 (87%)

Query: 60  FHTIPVLNPIVEMDGDEMTRIIWKMIKDKLIFPYLDLNIKYFDLGVQNRDATDDRVTVES 119
           F  I V NPIVEMDGDEMTRIIWK IKDKLI P+++L+IKYFDLG+  RD TDD+VTVES
Sbjct: 3   FQKIKVANPIVEMDGDEMTRIIWKYIKDKLILPFVELDIKYFDLGLPYRDETDDKVTVES 62

Query: 120 AEAALRYNVAVKCATITPDETRVKEFGLKSMWRSPNGTIRNILNGCYF 167
           AEA L+YNVA+KCATITPDE RVKEFGLKSMWRSPNGTIRNILNG  F
Sbjct: 63  AEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVF 110


>Medtr2g062840.1 | NADP-dependent isocitrate dehydrogenase | HC |
           chr2:26561074-26567297 | 20130731
          Length = 416

 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 96/108 (88%)

Query: 60  FHTIPVLNPIVEMDGDEMTRIIWKMIKDKLIFPYLDLNIKYFDLGVQNRDATDDRVTVES 119
           F  I V NPIVEMDGDEMTR+IW+MIKDKLIFP+L+L+IKYFDLG+ +RDAT+DRVTVES
Sbjct: 3   FQKIRVDNPIVEMDGDEMTRVIWRMIKDKLIFPFLELDIKYFDLGLPHRDATNDRVTVES 62

Query: 120 AEAALRYNVAVKCATITPDETRVKEFGLKSMWRSPNGTIRNILNGCYF 167
            EA L+YNVA+KCATITPDE RVKEF LK MW+SPNGTIRNILNG  F
Sbjct: 63  GEATLKYNVAIKCATITPDEGRVKEFNLKQMWKSPNGTIRNILNGTVF 110