Miyakogusa Predicted Gene

Lj0g3v0102019.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0102019.1 tr|D7L8X6|D7L8X6_ARALL Transcription initiation
factor IIB-2 OS=Arabidopsis lyrata subsp. lyrata GN=,92.02,0,no
description,Cyclin-like; TRANSCRIPTION INITIATION FACTOR
IIB-RELATED,Transcription factor TFIIB; ,CUFF.5743.1
         (238 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g091230.1 | transcription initiation factor IIB | HC | chr...   405   e-113
Medtr3g037190.1 | transcription initiation factor IIB | HC | chr...   392   e-109
Medtr1g053065.1 | transcription initiation factor IIB | HC | chr...   357   5e-99
Medtr3g040150.1 | transcription initiation factor IIB | HC | chr...   355   2e-98
Medtr3g040300.1 | transcription initiation factor IIB | HC | chr...   317   6e-87
Medtr1g023620.1 | hypothetical protein | LC | chr1:7591057-75918...    97   2e-20
Medtr5g019910.1 | transcription factor IIB | HC | chr5:7553976-7...    94   9e-20

>Medtr7g091230.1 | transcription initiation factor IIB | HC |
           chr7:36014917-36009852 | 20130731
          Length = 313

 Score =  405 bits (1041), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/239 (83%), Positives = 205/239 (85%), Gaps = 1/239 (0%)

Query: 1   MISNPKXXXXXXXXXXXXRWQNRGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYK 60
           +I+ P             RWQNRGSNPDR LILAFKTI TM++RLGLV TIKDRANEIYK
Sbjct: 75  VIAKPNGASGDFLSSSLGRWQNRGSNPDRGLILAFKTIGTMAERLGLVPTIKDRANEIYK 134

Query: 61  RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQL 120
           RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQL
Sbjct: 135 RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQL 194

Query: 121 GLEK-GQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAV 179
           GLE  GQSVEMGTIHAGDFMRRFCSNLGMN+            SEEFDIRRSPISI AAV
Sbjct: 195 GLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQAVKAAQESVQKSEEFDIRRSPISIAAAV 254

Query: 180 IYIITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNLSSP 238
           IYIITQLSDDKKPLKDIS+ATGVAEGTIRNSYKDLYPHVSKIIP WYAKEEDLKNL SP
Sbjct: 255 IYIITQLSDDKKPLKDISVATGVAEGTIRNSYKDLYPHVSKIIPNWYAKEEDLKNLCSP 313


>Medtr3g037190.1 | transcription initiation factor IIB | HC |
           chr3:13609403-13610344 | 20130731
          Length = 313

 Score =  392 bits (1007), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/239 (79%), Positives = 203/239 (84%), Gaps = 1/239 (0%)

Query: 1   MISNPKXXXXXXXXXXXXRWQNRGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYK 60
           +I+ P             RWQ  GSNPDR LILAFKTI TM++RLGLV  IKDRANEIYK
Sbjct: 75  VIAKPNGESVDFLSSAVNRWQKHGSNPDRGLILAFKTIDTMAERLGLVPIIKDRANEIYK 134

Query: 61  RVEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQL 120
           RV+DQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICS+ANGATKKEIGRAKEYIVKQL
Sbjct: 135 RVQDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSVANGATKKEIGRAKEYIVKQL 194

Query: 121 GLEK-GQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAV 179
           GLE  GQSVEMGTIHAGDFMRRFCSNLGMN+            SEEFDIRRSPI+I AAV
Sbjct: 195 GLENGGQSVEMGTIHAGDFMRRFCSNLGMNHQAVKAAQESVKKSEEFDIRRSPITIAAAV 254

Query: 180 IYIITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNLSSP 238
           IYIITQLSDDKKPLKDIS+ATGVAEGTI+NSYKDLYPHVSKIIPTWYA+EEDLKNL +P
Sbjct: 255 IYIITQLSDDKKPLKDISVATGVAEGTIKNSYKDLYPHVSKIIPTWYAEEEDLKNLCNP 313


>Medtr1g053065.1 | transcription initiation factor IIB | HC |
           chr1:22093097-22088892 | 20130731
          Length = 312

 Score =  357 bits (916), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 173/237 (72%), Positives = 192/237 (81%)

Query: 2   ISNPKXXXXXXXXXXXXRWQNRGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYKR 61
           I+ P             R QNR SN DRTL+LAFK I TM++RL L   IKDRANEIYKR
Sbjct: 76  IAKPNGSSSEFLSPTLNRLQNRASNHDRTLLLAFKNITTMAERLDLATFIKDRANEIYKR 135

Query: 62  VEDQKSSRGRNQDALLAACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLG 121
           VEDQKSSRGRNQDALLAAC+YIACRQE+KPRTVKEICS+ANGATKKEIGRAKEYIVKQLG
Sbjct: 136 VEDQKSSRGRNQDALLAACIYIACRQEEKPRTVKEICSVANGATKKEIGRAKEYIVKQLG 195

Query: 122 LEKGQSVEMGTIHAGDFMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAVIY 181
           L+ GQS+EMGTI+AGDFMRRFCS + +NN            SEEFDIRRSPI+I AAVIY
Sbjct: 196 LDNGQSMEMGTINAGDFMRRFCSTIDLNNQARKAAMEAVKKSEEFDIRRSPITIAAAVIY 255

Query: 182 IITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNLSSP 238
           II+QLS DKKPLK ISI TGVAEGTI+ SYKDLYP+++KIIP WYAKEEDLK+LS P
Sbjct: 256 IISQLSGDKKPLKTISIVTGVAEGTIKGSYKDLYPYITKIIPNWYAKEEDLKSLSGP 312


>Medtr3g040150.1 | transcription initiation factor IIB | HC |
           chr3:14074475-14075956 | 20130731
          Length = 405

 Score =  355 bits (911), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 170/218 (77%), Positives = 188/218 (86%), Gaps = 1/218 (0%)

Query: 19  RWQNRGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLA 78
           RWQN  SNPD  LI++F+TI  M+++LGLV TIKDRANEIYKRVEDQKSS+GRNQ+ALLA
Sbjct: 88  RWQNSSSNPDLGLIVSFQTIDIMAEKLGLVPTIKDRANEIYKRVEDQKSSKGRNQEALLA 147

Query: 79  ACLYIACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLGLEK-GQSVEMGTIHAGD 137
           AC+YIACRQEDKPRT+KEIC IANGATKKEI RAKEYIVKQLGLE  GQS+EMG IH GD
Sbjct: 148 ACVYIACRQEDKPRTIKEICLIANGATKKEIVRAKEYIVKQLGLENGGQSIEMGIIHIGD 207

Query: 138 FMRRFCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAVIYIITQLSDDKKPLKDIS 197
           FM RFCSNLGMN+            SEEFDIRRSPISI A VIYIIT LSDDKK L+DIS
Sbjct: 208 FMGRFCSNLGMNHQAVKAATESVQNSEEFDIRRSPISIAATVIYIITHLSDDKKSLRDIS 267

Query: 198 IATGVAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNL 235
           +ATGV+EGTIRN+YKD++PHVSKIIPTWYAKEEDLKNL
Sbjct: 268 VATGVSEGTIRNTYKDIFPHVSKIIPTWYAKEEDLKNL 305


>Medtr3g040300.1 | transcription initiation factor IIB | HC |
           chr3:14150000-14150812 | 20130731
          Length = 270

 Score =  317 bits (812), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 162/217 (74%), Positives = 173/217 (79%), Gaps = 5/217 (2%)

Query: 23  RGSNPDRTLILAFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLY 82
           R   P   L++    I TM+++LGLV TIKDRA EIYK V +QK S+ RNQDALLAACLY
Sbjct: 58  RVGGPSNPLLI----IDTMTEKLGLVPTIKDRAIEIYKLVANQKYSKARNQDALLAACLY 113

Query: 83  IACRQEDKPRTVKEICSIANGATKKEIGRAKEYIVKQLGLEKG-QSVEMGTIHAGDFMRR 141
           IACRQEDKP TVKEI SIA GATKKEIGRAK+YI+KQL LE G QSVEMGT H GDFM R
Sbjct: 114 IACRQEDKPHTVKEISSIAIGATKKEIGRAKQYIMKQLALENGGQSVEMGTTHIGDFMGR 173

Query: 142 FCSNLGMNNXXXXXXXXXXXXSEEFDIRRSPISITAAVIYIITQLSDDKKPLKDISIATG 201
           FCSNLGMN+            SEEFDIRRSPISI A VIYIITQLSDDKK LKDIS+ATG
Sbjct: 174 FCSNLGMNHQAVKAANESVQNSEEFDIRRSPISIAATVIYIITQLSDDKKSLKDISVATG 233

Query: 202 VAEGTIRNSYKDLYPHVSKIIPTWYAKEEDLKNLSSP 238
           VAEGTIRNSYKDLYP VSKIIPTWYAKEEDLKNL  P
Sbjct: 234 VAEGTIRNSYKDLYPRVSKIIPTWYAKEEDLKNLCIP 270


>Medtr1g023620.1 | hypothetical protein | LC | chr1:7591057-7591855
           | 20130731
          Length = 121

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/54 (85%), Positives = 48/54 (88%)

Query: 163 SEEFDIRRSPISITAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSYKDLYP 216
           SEEFDIRRSPIS  AAVIYII QLSDDKKPLKDIS+A G +E TIRNSYKDLYP
Sbjct: 63  SEEFDIRRSPISNAAAVIYIIIQLSDDKKPLKDISVAIGFSEVTIRNSYKDLYP 116


>Medtr5g019910.1 | transcription factor IIB | HC |
           chr5:7553976-7558232 | 20130731
          Length = 487

 Score = 94.4 bits (233), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 102/195 (52%), Gaps = 7/195 (3%)

Query: 34  AFKTIATMSDRLGLVATIKDRANEIYKRVEDQKSSRGRNQDALLAACLYIACRQEDKPRT 93
           A+  I  +S  LGL + I D A ++++        R R+ +AL  A L  A R+  +PRT
Sbjct: 134 AYMQIIDVSSILGLESDISDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPRT 193

Query: 94  VKEICSIANGATKKEIGRAKEYIVKQLGLEKGQSVEMGTIHAGDFMRRFCSNLGMNNXXX 153
           ++EI SIA    +KEIG+  + + + L L +  +    ++H    M RFC+ L +N    
Sbjct: 194 LQEI-SIAANVAQKEIGKYIKILGEALQLSQPINSNSISVH----MPRFCTLLQLNKSAQ 248

Query: 154 XXXXXX--XXXSEEFDIRRSPISITAAVIYIITQLSDDKKPLKDISIATGVAEGTIRNSY 211
                      ++ F  RR+PISI+AA IY+  QL D +K   +I   TG+ E T+R  Y
Sbjct: 249 ELATHIGDVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 308

Query: 212 KDLYPHVSKIIPTWY 226
           K+L  +   ++P+ Y
Sbjct: 309 KELLENWDDLLPSNY 323