Miyakogusa Predicted Gene

Lj0g3v0101809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101809.1 Non Characterized Hit- tr|D8RPF0|D8RPF0_SELML
Putative uncharacterized protein (Fragment) OS=Selagin,56.96,4e-19,no
description,Nucleotide-binding, alpha-beta plait; seg,NULL;
RNA-binding domain, RBD,NULL;
RRM,RNA,NODE_40706_length_490_cov_160.493881.path3.1
         (166 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g023060.2 | RNA-binding (RRM/RBD/RNP motif) family protein...   153   7e-38
Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   153   8e-38
Medtr5g023060.3 | RNA-binding (RRM/RBD/RNP motif) family protein...   152   2e-37
Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein...   143   9e-35
Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein...   111   4e-25
Medtr7g096260.2 | multiple RNA-binding domain protein | HC | chr...    53   1e-07
Medtr7g096260.1 | multiple RNA-binding domain protein | HC | chr...    53   1e-07
Medtr7g094670.1 | mRNA capping enzyme, putative | LC | chr7:3777...    51   4e-07
Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein...    51   6e-07
Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein...    47   8e-06

>Medtr5g023060.2 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:9164769-9166628 | 20130731
          Length = 236

 Score =  153 bits (387), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 69/78 (88%), Positives = 74/78 (94%)

Query: 89  GGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANRC 148
           GG+TLYVTGLSSRVTERDLEEHF+KEGKVASCFLVVEPRTRISRGFAF+TMDT E ANRC
Sbjct: 129 GGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRC 188

Query: 149 FKYLNQSVLECRYLTVER 166
            KYLNQS+LE RY+TVER
Sbjct: 189 IKYLNQSILEGRYITVER 206


>Medtr5g023060.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:9164769-9167836 | 20130731
          Length = 303

 Score =  153 bits (386), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 69/78 (88%), Positives = 74/78 (94%)

Query: 89  GGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANRC 148
           GG+TLYVTGLSSRVTERDLEEHF+KEGKVASCFLVVEPRTRISRGFAF+TMDT E ANRC
Sbjct: 129 GGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRC 188

Query: 149 FKYLNQSVLECRYLTVER 166
            KYLNQS+LE RY+TVER
Sbjct: 189 IKYLNQSILEGRYITVER 206


>Medtr5g023060.3 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr5:9164769-9166628 | 20130731
          Length = 213

 Score =  152 bits (383), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 69/78 (88%), Positives = 74/78 (94%)

Query: 89  GGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANRC 148
           GG+TLYVTGLSSRVTERDLEEHF+KEGKVASCFLVVEPRTRISRGFAF+TMDT E ANRC
Sbjct: 129 GGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDTAEDANRC 188

Query: 149 FKYLNQSVLECRYLTVER 166
            KYLNQS+LE RY+TVER
Sbjct: 189 IKYLNQSILEGRYITVER 206


>Medtr8g074790.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr8:31620260-31623626 | 20130731
          Length = 270

 Score =  143 bits (360), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 73/79 (92%)

Query: 88  NGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANR 147
           N GNTLYVTGLSSRVT+RDLE+HF+KEGKVASCFLVVEPRTRISRGFAF+TMD+ E A R
Sbjct: 59  NPGNTLYVTGLSSRVTDRDLEDHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAER 118

Query: 148 CFKYLNQSVLECRYLTVER 166
           C K+LNQSVLE RY+TVER
Sbjct: 119 CIKHLNQSVLEGRYITVER 137


>Medtr3g462330.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr3:24877263-24880115 | 20130731
          Length = 340

 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 64/79 (81%)

Query: 88  NGGNTLYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANR 147
           N GN LYVTGLS R+T+R+LE+HF+ +GKV    LVV+P TR SRGF F+TMDT+E A+R
Sbjct: 42  NPGNNLYVTGLSPRITKRELEKHFSAKGKVVDVHLVVDPWTRESRGFGFVTMDTLEEADR 101

Query: 148 CFKYLNQSVLECRYLTVER 166
           C KYLN+SVLE R +TVE+
Sbjct: 102 CVKYLNRSVLEGRVITVEK 120


>Medtr7g096260.2 | multiple RNA-binding domain protein | HC |
           chr7:38600263-38612243 | 20130731
          Length = 723

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%)

Query: 93  LYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANRCFKYL 152
           L+V  L    TE +LEEHF++ G V+   L+V   T+ S+G AFI     E A R  +  
Sbjct: 194 LFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEES 253

Query: 153 NQSVLECRYLTV 164
           N S+ + R L V
Sbjct: 254 NNSIFQGRLLRV 265


>Medtr7g096260.1 | multiple RNA-binding domain protein | HC |
           chr7:38601352-38612085 | 20130731
          Length = 709

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 39/72 (54%)

Query: 93  LYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANRCFKYL 152
           L+V  L    TE +LEEHF++ G V+   L+V   T+ S+G AFI     E A R  +  
Sbjct: 180 LFVLNLPYSTTEEELEEHFSQFGSVSQVHLLVHEVTKRSKGIAFIHFSVPEFAARALEES 239

Query: 153 NQSVLECRYLTV 164
           N S+ + R L V
Sbjct: 240 NNSIFQGRLLRV 251


>Medtr7g094670.1 | mRNA capping enzyme, putative | LC |
           chr7:37775862-37750453 | 20130731
          Length = 1678

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 85  EDRNGGNT---LYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDT 141
           ED+ G +    L+V  L    TE +LEEHF++ G V+   LVV+  T+ S+G AFI    
Sbjct: 890 EDKKGVSEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQVHLVVDKDTKRSKGRAFIHFSV 949

Query: 142 VEVANRCFKYLNQSVLECRYLTV 164
            E A R  +  + S+ + R L V
Sbjct: 950 PEFAARALEESDNSIFQGRLLHV 972


>Medtr7g094660.1 | RNA-binding (RRM/RBD/RNP motif) family protein |
           HC | chr7:37745112-37734961 | 20130731
          Length = 865

 Score = 50.8 bits (120), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 85  EDRNGGNT---LYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDT 141
           ED+ G +    L+V  L    TE +LEEHF++ G V+   LVV+  T+ S+G A+I    
Sbjct: 320 EDKKGVSEPCRLFVRNLPYSTTEEELEEHFSQFGSVSQAHLVVDKDTKRSKGIAYIHFSA 379

Query: 142 VEVANRCFKYLNQSVLECRYLTV 164
            E A R  +  + S+ + R L V
Sbjct: 380 PEFAARALEESDNSIFQGRLLHV 402


>Medtr7g081210.1 | RNA recognition motif, a.k.a. RRM, RBD protein |
           HC | chr7:30979896-30974591 | 20130731
          Length = 782

 Score = 47.0 bits (110), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 93  LYVTGLSSRVTERDLEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEVANRCFKYL 152
           ++V GL    TE DL + F+K G++    + V P+T+ ++GFA +  +TVE   R    L
Sbjct: 196 VFVGGLDKEATEHDLRKVFSKVGEITEVRMTVNPQTKRNKGFALLRFETVEHVKRALAEL 255

Query: 153 NQSVL 157
              V+
Sbjct: 256 KNPVI 260