Miyakogusa Predicted Gene

Lj0g3v0101609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101609.1 Non Characterized Hit- tr|D5A836|D5A836_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,41.01,2e-16,seg,NULL,NODE_43686_length_810_cov_55.812347.path2.1
         (149 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g045660.1 | transmembrane protein, putative | HC | chr1:17...   227   3e-60
Medtr1g045660.2 | transmembrane protein, putative | HC | chr1:17...   132   1e-31

>Medtr1g045660.1 | transmembrane protein, putative | HC |
           chr1:17144070-17137874 | 20130731
          Length = 150

 Score =  227 bits (579), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 124/149 (83%), Gaps = 1/149 (0%)

Query: 1   MEVQQWWRLRFSFRSATMVVCFLNIVTAIFLLHGFLASS-YTRNKLSTANSNSAQLSYIK 59
           MEVQQWW+LRFSF++AT++VCFLNI+TAIFLLHGF  SS YTR KLST N+NSA+L+YIK
Sbjct: 1   MEVQQWWKLRFSFKNATILVCFLNIITAIFLLHGFFFSSPYTRTKLSTQNTNSAELNYIK 60

Query: 60  ESEEIRLAMLPLELIKRVREIEQEVYSEPEXXXXXXXXXXXXVDLSKRLKDLRSLNLRTF 119
           ESEEIRLAMLPLELIKRVREIEQE Y+EPE            VDLSKRLKD RSLN    
Sbjct: 61  ESEEIRLAMLPLELIKRVREIEQEGYTEPETAQKKDTKQTAAVDLSKRLKDFRSLNDAAS 120

Query: 120 LSPLEEWRKRKMERARQRQLEKNGTTSSQ 148
           L  LEEWRKRKMERARQRQLEKNGTTSSQ
Sbjct: 121 LKALEEWRKRKMERARQRQLEKNGTTSSQ 149


>Medtr1g045660.2 | transmembrane protein, putative | HC |
          chr1:17144070-17137840 | 20130731
          Length = 112

 Score =  132 bits (332), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/91 (72%), Positives = 79/91 (86%), Gaps = 2/91 (2%)

Query: 1  MEVQQWWRLRFSFRSATMVVCFLNIVTAIFLLHGFLASS-YTRNKLSTANSNSAQLSYIK 59
          MEVQQWW+LRFSF++AT++VCFLNI+TAIFLLHGF  SS YTR KLST N+NSA+L+YIK
Sbjct: 1  MEVQQWWKLRFSFKNATILVCFLNIITAIFLLHGFFFSSPYTRTKLSTQNTNSAELNYIK 60

Query: 60 ESEEIRLAMLPLELIKRV-REIEQEVYSEPE 89
          ESEEIRLAMLPLELIKR+ R   +E +  P+
Sbjct: 61 ESEEIRLAMLPLELIKRLWRNGVKEKWRGPD 91