Miyakogusa Predicted Gene

Lj0g3v0101539.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101539.1 Non Characterized Hit- tr|I1MW66|I1MW66_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.27788
PE,85.45,0,Ribonuclease H-like,Ribonuclease H-like domain; no
description,NULL; DNA_pol_A_exo1,3'-5' exonucleas,CUFF.5705.1
         (228 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g027760.1 | exosome complex exonuclease RRP6 | HC | chr6:9...   387   e-108
Medtr6g027760.2 | exosome complex exonuclease RRP6 | HC | chr6:9...   384   e-107
Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-3352415...   323   7e-89
Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-3352415...   322   2e-88
Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-3352172...   319   1e-87
Medtr7g087760.1 | hypothetical protein | LC | chr7:34121373-3412...   127   1e-29
Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC | chr4:1...   121   7e-28
Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC | chr4:1...   121   7e-28

>Medtr6g027760.1 | exosome complex exonuclease RRP6 | HC |
           chr6:9716121-9707250 | 20130731
          Length = 882

 Score =  387 bits (993), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 175/211 (82%), Positives = 202/211 (95%)

Query: 18  TTGPKPKVPFHIPTIRRPQDEYNILVNNTNMPFEHVWLQRSEDGDRFIHPLEKIFVLDFV 77
           T G K K+PFHIPTIRRPQDE++I+VNN N+PFEHVWLQRS+DG +F+HPLEK+ VLDFV
Sbjct: 180 TVGGKAKIPFHIPTIRRPQDEFSIIVNNANVPFEHVWLQRSDDGQKFVHPLEKLSVLDFV 239

Query: 78  DKDPGDVLPKKPPPIESTPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCL 137
           DKDP +++P+KPP +ESTPFKLVEEVKDLK++AAKLRSV+EFAVDLEHNQYRSFQGLTCL
Sbjct: 240 DKDPENIVPQKPPSLESTPFKLVEEVKDLKEMAAKLRSVNEFAVDLEHNQYRSFQGLTCL 299

Query: 138 MQISTRTEDFVVDTLKLRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLF 197
           MQISTRTEDFVVDTLKLRIHIGP+LREVFKDP+KRKVMHGAD+DI+WLQRDFGIY+CN+F
Sbjct: 300 MQISTRTEDFVVDTLKLRIHIGPHLREVFKDPSKRKVMHGADKDIVWLQRDFGIYVCNMF 359

Query: 198 DTGQASKVLKLDRNSLEYLLHHFVEVTANKE 228
           DTGQASKVLKL+RNSLE+LL+HF E+TANKE
Sbjct: 360 DTGQASKVLKLERNSLEHLLNHFCEITANKE 390


>Medtr6g027760.2 | exosome complex exonuclease RRP6 | HC |
           chr6:9716121-9707250 | 20130731
          Length = 651

 Score =  384 bits (985), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 175/211 (82%), Positives = 202/211 (95%)

Query: 18  TTGPKPKVPFHIPTIRRPQDEYNILVNNTNMPFEHVWLQRSEDGDRFIHPLEKIFVLDFV 77
           T G K K+PFHIPTIRRPQDE++I+VNN N+PFEHVWLQRS+DG +F+HPLEK+ VLDFV
Sbjct: 180 TVGGKAKIPFHIPTIRRPQDEFSIIVNNANVPFEHVWLQRSDDGQKFVHPLEKLSVLDFV 239

Query: 78  DKDPGDVLPKKPPPIESTPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCL 137
           DKDP +++P+KPP +ESTPFKLVEEVKDLK++AAKLRSV+EFAVDLEHNQYRSFQGLTCL
Sbjct: 240 DKDPENIVPQKPPSLESTPFKLVEEVKDLKEMAAKLRSVNEFAVDLEHNQYRSFQGLTCL 299

Query: 138 MQISTRTEDFVVDTLKLRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLF 197
           MQISTRTEDFVVDTLKLRIHIGP+LREVFKDP+KRKVMHGAD+DI+WLQRDFGIY+CN+F
Sbjct: 300 MQISTRTEDFVVDTLKLRIHIGPHLREVFKDPSKRKVMHGADKDIVWLQRDFGIYVCNMF 359

Query: 198 DTGQASKVLKLDRNSLEYLLHHFVEVTANKE 228
           DTGQASKVLKL+RNSLE+LL+HF E+TANKE
Sbjct: 360 DTGQASKVLKLERNSLEHLLNHFCEITANKE 390


>Medtr7g086370.1 | 3'-5' exonuclease | HC | chr7:33513431-33524154 |
           20130731
          Length = 693

 Score =  323 bits (829), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 182/210 (86%), Gaps = 3/210 (1%)

Query: 22  KPKVPFHIPTIRRPQDEYNILVNNTNMPFEHVWLQR--SEDGDRFIHPLEKIFVLDFVDK 79
           K KV FH+ T+R+PQ  YN+ V+N+N PFEHVWL++  +EDG+RFIHPLE   VLDFVDK
Sbjct: 131 KKKVSFHVHTLRKPQYHYNLAVDNSNQPFEHVWLEKEKTEDGERFIHPLEYYSVLDFVDK 190

Query: 80  DPGDVL-PKKPPPIESTPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCLM 138
           +  + L P KPPP+E TPFKLVE+VK LK+LAAKL  VDEFAVDLEHNQYRSFQGLTCLM
Sbjct: 191 NSIESLVPVKPPPLEFTPFKLVEDVKGLKELAAKLSLVDEFAVDLEHNQYRSFQGLTCLM 250

Query: 139 QISTRTEDFVVDTLKLRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLFD 198
           QISTRTEDF+VDTLKLR H+G +LR+VF DPTK+KV+HGADRDI+WLQRDFGIYICN+FD
Sbjct: 251 QISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMFD 310

Query: 199 TGQASKVLKLDRNSLEYLLHHFVEVTANKE 228
           TGQAS+VLK++R SL++LL HF  VTANKE
Sbjct: 311 TGQASRVLKMERYSLQHLLQHFCGVTANKE 340


>Medtr7g086370.2 | 3'-5' exonuclease | HC | chr7:33513450-33524154 |
           20130731
          Length = 598

 Score =  322 bits (825), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 182/210 (86%), Gaps = 3/210 (1%)

Query: 22  KPKVPFHIPTIRRPQDEYNILVNNTNMPFEHVWLQR--SEDGDRFIHPLEKIFVLDFVDK 79
           K KV FH+ T+R+PQ  YN+ V+N+N PFEHVWL++  +EDG+RFIHPLE   VLDFVDK
Sbjct: 131 KKKVSFHVHTLRKPQYHYNLAVDNSNQPFEHVWLEKEKTEDGERFIHPLEYYSVLDFVDK 190

Query: 80  DPGDVL-PKKPPPIESTPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCLM 138
           +  + L P KPPP+E TPFKLVE+VK LK+LAAKL  VDEFAVDLEHNQYRSFQGLTCLM
Sbjct: 191 NSIESLVPVKPPPLEFTPFKLVEDVKGLKELAAKLSLVDEFAVDLEHNQYRSFQGLTCLM 250

Query: 139 QISTRTEDFVVDTLKLRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLFD 198
           QISTRTEDF+VDTLKLR H+G +LR+VF DPTK+KV+HGADRDI+WLQRDFGIYICN+FD
Sbjct: 251 QISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMFD 310

Query: 199 TGQASKVLKLDRNSLEYLLHHFVEVTANKE 228
           TGQAS+VLK++R SL++LL HF  VTANKE
Sbjct: 311 TGQASRVLKMERYSLQHLLQHFCGVTANKE 340


>Medtr7g086370.3 | 3'-5' exonuclease | HC | chr7:33513421-33521721 |
           20130731
          Length = 438

 Score =  319 bits (818), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 154/210 (73%), Positives = 182/210 (86%), Gaps = 3/210 (1%)

Query: 22  KPKVPFHIPTIRRPQDEYNILVNNTNMPFEHVWLQR--SEDGDRFIHPLEKIFVLDFVDK 79
           K KV FH+ T+R+PQ  YN+ V+N+N PFEHVWL++  +EDG+RFIHPLE   VLDFVDK
Sbjct: 131 KKKVSFHVHTLRKPQYHYNLAVDNSNQPFEHVWLEKEKTEDGERFIHPLEYYSVLDFVDK 190

Query: 80  DPGDVL-PKKPPPIESTPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCLM 138
           +  + L P KPPP+E TPFKLVE+VK LK+LAAKL  VDEFAVDLEHNQYRSFQGLTCLM
Sbjct: 191 NSIESLVPVKPPPLEFTPFKLVEDVKGLKELAAKLSLVDEFAVDLEHNQYRSFQGLTCLM 250

Query: 139 QISTRTEDFVVDTLKLRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLFD 198
           QISTRTEDF+VDTLKLR H+G +LR+VF DPTK+KV+HGADRDI+WLQRDFGIYICN+FD
Sbjct: 251 QISTRTEDFIVDTLKLRDHVGKHLRDVFMDPTKKKVLHGADRDIVWLQRDFGIYICNMFD 310

Query: 199 TGQASKVLKLDRNSLEYLLHHFVEVTANKE 228
           TGQAS+VLK++R SL++LL HF  VTANKE
Sbjct: 311 TGQASRVLKMERYSLQHLLQHFCGVTANKE 340


>Medtr7g087760.1 | hypothetical protein | LC |
           chr7:34121373-34124359 | 20130731
          Length = 270

 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/113 (59%), Positives = 82/113 (72%), Gaps = 3/113 (2%)

Query: 22  KPKVPFHIPTIRRPQDEYNILVNNTNMPFEHVWLQR--SEDGDRFIHPLEKIFVLDFVDK 79
           K KV FH+ T+R+ Q  YN+ V+N+N  FEHVWL++  +EDG+RF+HPLE   VLDFVDK
Sbjct: 32  KKKVSFHVHTLRKLQYHYNLAVDNSNQTFEHVWLEKEKTEDGERFVHPLEYYSVLDFVDK 91

Query: 80  DPGDVL-PKKPPPIESTPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSF 131
           +  + L P KPPP+E TPFKLVEEVK LK+LAAKL  VDEFAV       RS 
Sbjct: 92  NSIESLVPVKPPPLECTPFKLVEEVKALKELAAKLSLVDEFAVTTNSICTRSL 144


>Medtr4g048230.2 | 3'-5' exonuclease domain protein | HC |
           chr4:17080472-17072108 | 20130731
          Length = 908

 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 5/197 (2%)

Query: 34  RPQDEYN-ILVNNTNMPFEHVWLQRSEDGDR--FIHPLEKIFVLDFVDKDPGDVLPKKPP 90
           +PQ  +  +L +N+  PF+H+    S++      +HP +        +  P   L  +  
Sbjct: 49  KPQSAFKRVLADNSYAPFKHLSFNASKNNGNGSSLHPFQAEITALLQNHQPEIELGAEKL 108

Query: 91  PIESTPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVD 150
            +  + +  V+    LK L   L     F VD E +  RSF G T L+QIST+ ED+++D
Sbjct: 109 EMNDS-YVWVDTEMQLKKLVNVLSKEKFFGVDTEQHSLRSFLGFTGLVQISTQQEDYLID 167

Query: 151 TLKLRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLFDTGQASKVLKLDR 210
           T+ L   +   LR VF DP+  KV HGAD D+LWLQRDF IY+ NLFDT +A +VL   +
Sbjct: 168 TIALHDSM-EILRPVFADPSICKVFHGADNDVLWLQRDFHIYVVNLFDTSKACEVLSKPQ 226

Query: 211 NSLEYLLHHFVEVTANK 227
            SL YLL  +  V  NK
Sbjct: 227 KSLAYLLETYCGVNTNK 243


>Medtr4g048230.1 | 3'-5' exonuclease domain protein | HC |
           chr4:17080440-17072522 | 20130731
          Length = 930

 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 74/197 (37%), Positives = 106/197 (53%), Gaps = 5/197 (2%)

Query: 34  RPQDEYN-ILVNNTNMPFEHVWLQRSEDGDR--FIHPLEKIFVLDFVDKDPGDVLPKKPP 90
           +PQ  +  +L +N+  PF+H+    S++      +HP +        +  P   L  +  
Sbjct: 49  KPQSAFKRVLADNSYAPFKHLSFNASKNNGNGSSLHPFQAEITALLQNHQPEIELGAEKL 108

Query: 91  PIESTPFKLVEEVKDLKDLAAKLRSVDEFAVDLEHNQYRSFQGLTCLMQISTRTEDFVVD 150
            +  + +  V+    LK L   L     F VD E +  RSF G T L+QIST+ ED+++D
Sbjct: 109 EMNDS-YVWVDTEMQLKKLVNVLSKEKFFGVDTEQHSLRSFLGFTGLVQISTQQEDYLID 167

Query: 151 TLKLRIHIGPYLREVFKDPTKRKVMHGADRDILWLQRDFGIYICNLFDTGQASKVLKLDR 210
           T+ L   +   LR VF DP+  KV HGAD D+LWLQRDF IY+ NLFDT +A +VL   +
Sbjct: 168 TIALHDSM-EILRPVFADPSICKVFHGADNDVLWLQRDFHIYVVNLFDTSKACEVLSKPQ 226

Query: 211 NSLEYLLHHFVEVTANK 227
            SL YLL  +  V  NK
Sbjct: 227 KSLAYLLETYCGVNTNK 243