Miyakogusa Predicted Gene

Lj0g3v0101459.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101459.1 Non Characterized Hit- tr|D8SK47|D8SK47_SELML
Putative uncharacterized protein OS=Selaginella
moelle,30.8,2e-18,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL; coiled-coil,NULL,CUFF.5697.1
         (239 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g090110.1 | TFIIH basal transcription factor complex subun...   300   1e-81
Medtr6g071555.1 | TFIIH basal transcription factor complex subun...   281   5e-76

>Medtr1g090110.1 | TFIIH basal transcription factor complex subunit,
           putative | HC | chr1:40358314-40346004 | 20130731
          Length = 586

 Score =  300 bits (767), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 166/266 (62%), Positives = 184/266 (69%), Gaps = 35/266 (13%)

Query: 1   MEADQGDDYTHLPDHRIFRDGSKEIPEAQHPLCRRTLLQDLNRQGAVVLEGRTLDI-ME- 58
           MEADQGDDYTHLPDH IFRDGSKE  EAQ+ L RRTLLQDLNRQ  VVLEG+TLDI ME 
Sbjct: 284 MEADQGDDYTHLPDHGIFRDGSKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEH 343

Query: 59  --------TEYIHESDGVREEARRNRISTMTQIEDLQAQDDHPFAPLCIKDPRDYFGSQQ 110
                       HESDGV EE RRNRIS M QIEDLQAQDDHPFAPLCIKDPRDYF SQQ
Sbjct: 344 PRTAVEALARRKHESDGVVEE-RRNRISKMAQIEDLQAQDDHPFAPLCIKDPRDYFDSQQ 402

Query: 111 ANG----------------SLGSDEEAYGYLRASISKIKAKGLKDPLLSSEIALNGL--M 152
           AN                 +LGS EEAYG LR SIS IK  GL+DPLLS E+A   L  +
Sbjct: 403 ANAVKTLDDSLSGKEKIRCNLGS-EEAYGSLRESISNIKTMGLRDPLLSHEVAFKVLSEL 461

Query: 153 TKNVXXXXXXXXXXXXXXXQEISDHDSLPSTMRDELLDHLRCSQELLRHFWSSYPITTRH 212
           TKN+                +I     LP+T +++LLDH  CSQELLRHFWSSYP+T + 
Sbjct: 462 TKNISSTKSNLGKSSQESVLDI-----LPNTTKEKLLDHWVCSQELLRHFWSSYPVTKQS 516

Query: 213 LINKTRRLKEAISQLYSKLEEIKVSA 238
           L++K RRLK+AISQ+YSKLEEIKVSA
Sbjct: 517 LVDKARRLKDAISQIYSKLEEIKVSA 542


>Medtr6g071555.1 | TFIIH basal transcription factor complex subunit,
           putative | HC | chr6:26537866-26536124 | 20130731
          Length = 580

 Score =  281 bits (718), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 156/264 (59%), Positives = 176/264 (66%), Gaps = 38/264 (14%)

Query: 1   MEADQGDDYTHLPDHRIFRDGSKEIPEAQHPLCRRTLLQDLNRQGAVVLEGRTLDI---- 56
           MEADQGDDYTHLPDH IFRDG KE  EAQ+ L RRTLLQDLNRQ  VVLEG+TLDI    
Sbjct: 285 MEADQGDDYTHLPDHGIFRDGCKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEH 344

Query: 57  --METEYI----HESDGVREEARRNRISTMTQIEDLQAQDDHPFAPLCIKDPRDYFGSQQ 110
              E E +    HESDGV EE RRNRIS   QIEDLQAQD+HPF PLCIKDPRDYF SQQ
Sbjct: 345 PRTEVEVLARRKHESDGVVEE-RRNRISKTAQIEDLQAQDNHPFVPLCIKDPRDYFDSQQ 403

Query: 111 AN----------------GSLGSDEEAYGYLRASISKIKAKGLKDPLLSSEIALNGLMTK 154
           AN                 +LGS EEAY  LR SIS IK  GL+DPLLS ++A   L   
Sbjct: 404 ANVVKTFDESLADKEKIRRNLGS-EEAYDSLRESISNIKTMGLRDPLLSHKVAFKVLTVL 462

Query: 155 NVXXXXXXXXXXXXXXXQEISDHDSLPSTMRDELLDHLRCSQELLRHFWSSYPITTRHLI 214
           N                      D LP++ +++LLDH  CSQELLRHFWSSYP++T+ L+
Sbjct: 463 NKSISSTTKECVL----------DILPNSTKEKLLDHWVCSQELLRHFWSSYPVSTQSLV 512

Query: 215 NKTRRLKEAISQLYSKLEEIKVSA 238
           +K  RLK+AISQ+YSKLEEIKVSA
Sbjct: 513 SKATRLKDAISQIYSKLEEIKVSA 536