Miyakogusa Predicted Gene

Lj0g3v0101289.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101289.1 Non Characterized Hit- tr|D7TS57|D7TS57_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,91.67,0,Cpn60_TCP1,Chaperonin Cpn60/TCP-1; GroEL equatorial
domain-like,Chaperonin Cpn60/TCP-1; TCOMPLEXTCP1,CUFF.5684.1
         (144 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g090140.1 | TCP-1/cpn60 chaperonin family protein | HC | c...   273   3e-74
Medtr1g090130.1 | TCP-1/cpn60 chaperonin family protein | HC | c...   269   6e-73
Medtr8g017080.1 | TCP-1/cpn60 chaperonin family protein | HC | c...   180   3e-46
Medtr0991s0010.1 | TCP-1/cpn60 chaperonin family protein | HC | ...   126   7e-30
Medtr1g017390.1 | TCP-1/cpn60 chaperonin family protein | HC | c...   125   1e-29
Medtr1g017380.1 | TCP-1/cpn60 chaperonin family protein | HC | c...   123   5e-29
Medtr4g057970.1 | ruBisCO large subunit-binding protein protein ...   121   3e-28
Medtr4g084130.1 | TCP-1/cpn60 chaperonin family protein | HC | c...   110   6e-25
Medtr7g113470.1 | TCP-1/cpn60 chaperonin family protein | HC | c...    54   5e-08
Medtr7g113470.2 | TCP-1/cpn60 chaperonin family protein | HC | c...    54   5e-08
Medtr7g067470.1 | TCP-1/cpn60 chaperonin family protein | HC | c...    54   5e-08
Medtr7g060560.1 | endomembrane-like protein | LC | chr7:21891750...    53   1e-07
Medtr3g090510.1 | endomembrane-like protein | LC | chr3:41047335...    52   2e-07
Medtr7g406870.1 | TCP-1/cpn60 chaperonin family protein | HC | c...    48   4e-06

>Medtr1g090140.1 | TCP-1/cpn60 chaperonin family protein | HC |
           chr1:40381503-40376286 | 20130731
          Length = 574

 Score =  273 bits (698), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 132/144 (91%), Positives = 140/144 (97%)

Query: 1   MYRFATSLASKARIARNTSQQIGSRAAWSRNYAAKDIKFGVEARALMLKGVEELADAVKV 60
           MYRFA+SLASKARIAR+ + QIGSR AWSRNYAAK+IKFGVEARALMLKGVEELA+AVKV
Sbjct: 1   MYRFASSLASKARIARSNANQIGSRVAWSRNYAAKEIKFGVEARALMLKGVEELAEAVKV 60

Query: 61  TMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDVAGDGT 120
           TMGPKGRNVVIEQS+GAPKVTKDGVTVAKSIEFKD+VKN+GASLVKQVANATNDVAGDGT
Sbjct: 61  TMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNIGASLVKQVANATNDVAGDGT 120

Query: 121 TCATVLTRAIFAEGCKSVAAGMNA 144
           TCATVLTRAIF EGCKSVAAGMNA
Sbjct: 121 TCATVLTRAIFTEGCKSVAAGMNA 144


>Medtr1g090130.1 | TCP-1/cpn60 chaperonin family protein | HC |
           chr1:40370583-40364703 | 20130731
          Length = 576

 Score =  269 bits (688), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 129/144 (89%), Positives = 140/144 (97%)

Query: 1   MYRFATSLASKARIARNTSQQIGSRAAWSRNYAAKDIKFGVEARALMLKGVEELADAVKV 60
           MYRFA+SLASKARIARN  QQ+GSR AW+RNYAAK+IKFGVEARALMLKGVE+LA+AVKV
Sbjct: 1   MYRFASSLASKARIARNNVQQVGSRVAWNRNYAAKEIKFGVEARALMLKGVEDLAEAVKV 60

Query: 61  TMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDVAGDGT 120
           TMGPKGRNVVIEQS+GAPKVTKDGVTVAKSIEFK +VKN+GASLVKQVANATNDVAGDGT
Sbjct: 61  TMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKCKVKNIGASLVKQVANATNDVAGDGT 120

Query: 121 TCATVLTRAIFAEGCKSVAAGMNA 144
           TCAT+LTRAIF+EGCKSVAAGMNA
Sbjct: 121 TCATILTRAIFSEGCKSVAAGMNA 144


>Medtr8g017080.1 | TCP-1/cpn60 chaperonin family protein | HC |
           chr8:5738864-5745918 | 20130731
          Length = 576

 Score =  180 bits (457), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 96/144 (66%), Positives = 114/144 (79%), Gaps = 1/144 (0%)

Query: 1   MYRFATSLASKARIARNTSQQIGSRAAW-SRNYAAKDIKFGVEARALMLKGVEELADAVK 59
           MYRFA+ LAS    + + ++ +    A   RNY  KDIKFGV ARA ML+GV E+A+AVK
Sbjct: 1   MYRFASKLASSLASSTSKNKNLVCNGALLRRNYVTKDIKFGVGARAAMLQGVSEVAEAVK 60

Query: 60  VTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDVAGDG 119
           VTMGPKGRNV+IE+S   P+VTKDGVTVAKSI+FKD+ KN+GA L+KQVA ATN  AGDG
Sbjct: 61  VTMGPKGRNVIIEKSNRNPRVTKDGVTVAKSIKFKDKAKNLGADLIKQVAKATNSTAGDG 120

Query: 120 TTCATVLTRAIFAEGCKSVAAGMN 143
           TTCATVLT+AI  EGCKSVAAG+N
Sbjct: 121 TTCATVLTQAILIEGCKSVAAGVN 144


>Medtr0991s0010.1 | TCP-1/cpn60 chaperonin family protein | HC |
           scaffold0991:2739-1430 | 20130731
          Length = 188

 Score =  126 bits (316), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 62/112 (55%), Positives = 81/112 (72%), Gaps = 2/112 (1%)

Query: 34  AKDIKFGVEARAL--MLKGVEELADAVKVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSI 91
           AK++ F  +  A+  +  GV +LAD V VT+GPKGRNVV+E  YG+PK+  DGVTVAK +
Sbjct: 47  AKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEV 106

Query: 92  EFKDRVKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMN 143
           E +D V+N+GA LV+Q A  TND+AGDGTT + VL + + AEG K VAAG N
Sbjct: 107 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGAN 158


>Medtr1g017390.1 | TCP-1/cpn60 chaperonin family protein | HC |
           chr1:4833343-4839399 | 20130731
          Length = 591

 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 62/112 (55%), Positives = 81/112 (72%), Gaps = 2/112 (1%)

Query: 34  AKDIKFGVEARAL--MLKGVEELADAVKVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSI 91
           AK++ F  +  A+  +  GV +LAD V VT+GPKGRNVV+E  YG+PK+  DGVTVAK +
Sbjct: 47  AKELHFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAKEV 106

Query: 92  EFKDRVKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMN 143
           E +D V+N+GA LV+Q A  TND+AGDGTT + VL + + AEG K VAAG N
Sbjct: 107 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGAN 158


>Medtr1g017380.1 | TCP-1/cpn60 chaperonin family protein | HC |
           chr1:4821544-4827364 | 20130731
          Length = 591

 Score =  123 bits (309), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 81/112 (72%), Gaps = 2/112 (1%)

Query: 34  AKDIKFGVEARAL--MLKGVEELADAVKVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSI 91
           AK++ F  +  A+  +  GV +LAD V VT+GPKGRNVV+E  YG+PK+  DGVTVA+ +
Sbjct: 47  AKELYFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAREV 106

Query: 92  EFKDRVKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMN 143
           E +D V+N+GA LV+Q A  TND+AGDGTT + VL + + AEG K VAAG N
Sbjct: 107 ELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGAN 158


>Medtr4g057970.1 | ruBisCO large subunit-binding protein protein |
           HC | chr4:21470747-21466740 | 20130731
          Length = 587

 Score =  121 bits (303), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/141 (46%), Positives = 96/141 (68%), Gaps = 8/141 (5%)

Query: 6   TSLASKARIARNTSQQIGSRAAWSR---NYAAKDIKFGVEARALMLKGVEELADAVKVTM 62
           TSL+ KA    N   ++  R   +R     +AKDI F  ++R  M  G+++LADAV +T+
Sbjct: 22  TSLSRKA----NQHGRVNYRQKVNRFVVKASAKDIAFDQDSRRAMQAGIDKLADAVGLTL 77

Query: 63  GPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDVAGDGTTC 122
           GP+GRNVV+++ +G+PKV  DGVT+A++IE  D ++N GA+L+++VA+ TND AGDGTT 
Sbjct: 78  GPRGRNVVLDE-FGSPKVVNDGVTIARAIELPDAMENAGAALIREVASKTNDSAGDGTTT 136

Query: 123 ATVLTRAIFAEGCKSVAAGMN 143
           A++L R I   G  SV +G N
Sbjct: 137 ASILAREIIKLGLLSVTSGAN 157


>Medtr4g084130.1 | TCP-1/cpn60 chaperonin family protein | HC |
           chr4:32768836-32775738 | 20130731
          Length = 579

 Score =  110 bits (274), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 78/111 (70%), Gaps = 1/111 (0%)

Query: 33  AAKDIKFGVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIE 92
           + K I FG E R  +  G+++LADAV +T+GPKGRNV++ +S G  KV  DGVT+A+SIE
Sbjct: 40  SPKKISFGKECRENLQVGIDKLADAVSLTVGPKGRNVILSES-GKLKVINDGVTIARSIE 98

Query: 93  FKDRVKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMN 143
             D ++N GA L+++VA+  ND+AGDGT+ A +L RA+   G  +VA G N
Sbjct: 99  LSDAIENAGAMLIQEVASKMNDLAGDGTSTAIILARAMIKSGLSAVAFGAN 149


>Medtr7g113470.1 | TCP-1/cpn60 chaperonin family protein | HC |
           chr7:46741492-46747507 | 20130731
          Length = 527

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 8/107 (7%)

Query: 40  GVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSYGAPK---VTKDGVTVAKSIEFKDR 96
           G  AR     G   +AD VK T+GPKG + ++ QS G  +   VT DG T+ KS+     
Sbjct: 16  GERARMSSFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSL----H 70

Query: 97  VKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMN 143
           + N  A ++  ++   +D  GDGTT   VL   +  E  K VAA ++
Sbjct: 71  IDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIH 117


>Medtr7g113470.2 | TCP-1/cpn60 chaperonin family protein | HC |
           chr7:46742314-46747507 | 20130731
          Length = 527

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 8/107 (7%)

Query: 40  GVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSYGAPK---VTKDGVTVAKSIEFKDR 96
           G  AR     G   +AD VK T+GPKG + ++ QS G  +   VT DG T+ KS+     
Sbjct: 16  GERARMSSFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSL----H 70

Query: 97  VKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMN 143
           + N  A ++  ++   +D  GDGTT   VL   +  E  K VAA ++
Sbjct: 71  IDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIH 117


>Medtr7g067470.1 | TCP-1/cpn60 chaperonin family protein | HC |
           chr7:24646105-24640462 | 20130731
          Length = 527

 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 55/107 (51%), Gaps = 8/107 (7%)

Query: 40  GVEARALMLKGVEELADAVKVTMGPKGRNVVIEQSYGAPK---VTKDGVTVAKSIEFKDR 96
           G  AR     G   +AD VK T+GPKG + ++ QS G  +   VT DG T+ KS+     
Sbjct: 16  GERARMSSFVGAMAIADLVKTTLGPKGMDKIL-QSTGRGREVTVTNDGATILKSL----H 70

Query: 97  VKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMN 143
           + N  A ++  ++   +D  GDGTT   VL   +  E  K VAA ++
Sbjct: 71  IDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVAAKIH 117


>Medtr7g060560.1 | endomembrane-like protein | LC |
           chr7:21891750-21888765 | 20130731
          Length = 391

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/31 (80%), Positives = 26/31 (83%)

Query: 114 DVAGDGTTCATVLTRAIFAEGCKSVAAGMNA 144
           +V G  TTCATVL RAIF EGCKSVAAGMNA
Sbjct: 90  NVQGGRTTCATVLIRAIFKEGCKSVAAGMNA 120


>Medtr3g090510.1 | endomembrane-like protein | LC |
           chr3:41047335-41051365 | 20130731
          Length = 394

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 24/28 (85%)

Query: 117 GDGTTCATVLTRAIFAEGCKSVAAGMNA 144
           G  TTCATVL RAIF EGCKSVAAGMNA
Sbjct: 100 GGRTTCATVLIRAIFTEGCKSVAAGMNA 127


>Medtr7g406870.1 | TCP-1/cpn60 chaperonin family protein | HC |
           chr7:955309-948267 | 20130731
          Length = 535

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 54  LADAVKVTMGPKGRNVVIEQSYGAPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATN 113
           L D +K  +GPKG   ++    G  K+TKDG T+ K ++    ++N  A ++ + A A +
Sbjct: 29  LQDVLKSNLGPKGTIKMLVGGSGDIKLTKDGNTLLKEMQ----IQNPTAIMIARTAVAQD 84

Query: 114 DVAGDGTTCATVLTRAIFAEGCKSVAAGMN 143
           D++GDGTT   +    +  +  + +  GM+
Sbjct: 85  DISGDGTTSTVLFIGELMKQSERYIDEGMH 114