Miyakogusa Predicted Gene

Lj0g3v0101279.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101279.1 Non Characterized Hit- tr|C5WXC0|C5WXC0_SORBI
Putative uncharacterized protein Sb01g018340
OS=Sorghu,42.59,2e-16,seg,NULL; Katanin_con80,NULL; KATANIN P80
SUBUNIT,Katanin p80 subunit B1,CUFF.5682.1
         (163 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g012630.1 | katanin p80 WD40 repeat subunit B1-like protei...   247   3e-66
Medtr2g012630.2 | katanin p80 WD40 repeat subunit B1-like protei...   134   3e-32
Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protei...   134   3e-32

>Medtr2g012630.1 | katanin p80 WD40 repeat subunit B1-like protein |
            HC | chr2:3190941-3179834 | 20130731
          Length = 1111

 Score =  247 bits (631), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 126/163 (77%), Positives = 141/163 (86%)

Query: 1    MQTHDATLSNLRSRLTKLQVVRHFWERNDIKGAINALRKLPDQSVQADVISVLVEKMEIL 60
            M+THD TLSNLRSRLTKLQVVRHFWERNDIKGAI+ALRKLPDQSVQADVISVL+EKMEIL
Sbjct: 949  METHDVTLSNLRSRLTKLQVVRHFWERNDIKGAISALRKLPDQSVQADVISVLMEKMEIL 1008

Query: 61   SLDLFSCLFPVLTGLLDSRTERHXXXXXXXXXXXXXXFGPTIRATVSAPPSVGVDLHQEQ 120
            +LDL + L PVLTGLLDS+TERH              FG TI AT+SAPPSVGVDLH+EQ
Sbjct: 1009 TLDLLASLLPVLTGLLDSKTERHVKVSLDMLLKFAAVFGSTITATISAPPSVGVDLHREQ 1068

Query: 121  RRECCNQCFMQLQKTQMVLPILIRRGGLLAKSALELNLVLQQS 163
            RRECCN+CFM+LQK Q +LP+LIRRGGLLAKS++ELNLVLQ+S
Sbjct: 1069 RRECCNECFMELQKVQTILPMLIRRGGLLAKSSMELNLVLQRS 1111


>Medtr2g012630.2 | katanin p80 WD40 repeat subunit B1-like protein |
            HC | chr2:3190921-3179833 | 20130731
          Length = 1030

 Score =  134 bits (338), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 72/82 (87%), Positives = 78/82 (95%)

Query: 1    MQTHDATLSNLRSRLTKLQVVRHFWERNDIKGAINALRKLPDQSVQADVISVLVEKMEIL 60
            M+THD TLSNLRSRLTKLQVVRHFWERNDIKGAI+ALRKLPDQSVQADVISVL+EKMEIL
Sbjct: 949  METHDVTLSNLRSRLTKLQVVRHFWERNDIKGAISALRKLPDQSVQADVISVLMEKMEIL 1008

Query: 61   SLDLFSCLFPVLTGLLDSRTER 82
            +LDL + L PVLTGLLDS+TER
Sbjct: 1009 TLDLLASLLPVLTGLLDSKTER 1030


>Medtr6g004040.1 | katanin p80 WD40 repeat subunit B1-like protein |
           HC | chr6:91770-77124 | 20130731
          Length = 760

 Score =  134 bits (338), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/162 (45%), Positives = 109/162 (67%)

Query: 1   MQTHDATLSNLRSRLTKLQVVRHFWERNDIKGAINALRKLPDQSVQADVISVLVEKMEIL 60
           M+ HD  +S++++R +KL+VV   WERND+   I+ + K+ D +V ADV+S+++EK++++
Sbjct: 597 MEQHDEFISSMQNRSSKLKVVFRRWERNDVTEVISTMAKMGDHAVIADVVSIIMEKIDMV 656

Query: 61  SLDLFSCLFPVLTGLLDSRTERHXXXXXXXXXXXXXXFGPTIRATVSAPPSVGVDLHQEQ 120
           +LDL + L P+LT LL S  +RH              FG  I +T+SA PSVGVD+  E+
Sbjct: 657 TLDLCTGLLPLLTDLLQSEMDRHLSISVEMLLNLVRVFGSVIYSTLSAKPSVGVDIEAEK 716

Query: 121 RRECCNQCFMQLQKTQMVLPILIRRGGLLAKSALELNLVLQQ 162
           R E CN CF++L+K +  LP L+RRGG +AKSA ELNL LQ 
Sbjct: 717 RLERCNVCFVELEKVKGFLPSLMRRGGSVAKSAHELNLALQD 758