Miyakogusa Predicted Gene
- Lj0g3v0101149.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0101149.2 tr|G7I5I4|G7I5I4_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_1g075940 PE=4
SV=1,32.32,2e-18,Rep_fac-A_C,Replication factor A, C-terminal; Nucleic
acid-binding proteins,Nucleic acid-binding, OB,CUFF.5670.2
(238 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p... 126 1e-29
Medtr8g062030.1 | replication factor-A carboxy-terminal domain p... 113 2e-25
Medtr3g056270.1 | replication factor-A carboxy-terminal domain p... 104 7e-23
Medtr4g036240.1 | replication factor-A carboxy-terminal domain p... 103 1e-22
Medtr4g036240.2 | replication factor-A carboxy-terminal domain p... 103 1e-22
Medtr4g036240.3 | replication factor-A carboxy-terminal domain p... 103 1e-22
Medtr1g075850.1 | replication factor-A carboxy-terminal domain p... 97 1e-20
Medtr6g445520.1 | replication factor-A carboxy-terminal domain p... 92 5e-19
Medtr4g046077.1 | replication factor-A carboxy-terminal domain p... 90 2e-18
Medtr4g040040.1 | replication factor-A carboxy-terminal domain p... 86 2e-17
Medtr8g479260.1 | replication factor-A carboxy-terminal domain p... 86 4e-17
Medtr2g008650.1 | replication factor-A carboxy-terminal domain p... 86 4e-17
Medtr0042s0170.1 | replication factor-A carboxy-terminal domain ... 84 1e-16
Medtr2g048560.1 | replication factor-A carboxy-terminal domain p... 80 2e-15
Medtr7g110100.1 | replication factor-A carboxy-terminal domain p... 79 4e-15
Medtr3g081610.1 | transmembrane protein, putative | LC | chr3:36... 74 9e-14
Medtr4g032585.1 | replication factor-A carboxy-terminal domain p... 74 2e-13
Medtr4g032565.1 | replication factor-A carboxy-terminal domain p... 73 2e-13
Medtr6g051890.1 | replication factor-A carboxy-terminal domain p... 73 2e-13
Medtr1g105785.1 | replication factor-A carboxy-terminal domain p... 72 3e-13
Medtr4g134870.1 | AP2 domain class transcription factor | LC | c... 70 2e-12
Medtr1g050500.1 | replication factor-A carboxy-terminal domain p... 69 4e-12
Medtr2g048550.1 | replication factor-A carboxy-terminal domain p... 68 9e-12
Medtr7g051400.1 | replication factor-A carboxy-terminal domain p... 66 4e-11
Medtr8g062060.1 | DUF223 domain protein | LC | chr8:25911934-259... 61 8e-10
Medtr1g492690.1 | hypothetical protein | HC | chr1:41541171-4153... 53 3e-07
Medtr0032s0020.1 | PIF1-like helicase | LC | scaffold0032:18195-... 51 1e-06
Medtr5g057125.1 | replication factor-A carboxy-terminal domain p... 50 1e-06
Medtr5g093790.1 | hypothetical protein | HC | chr5:40946221-4095... 50 3e-06
Medtr8g064300.1 | hypothetical protein | HC | chr8:26955992-2695... 49 4e-06
>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:33436158-33438920 | 20130731
Length = 517
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/155 (40%), Positives = 90/155 (58%), Gaps = 1/155 (0%)
Query: 1 MEDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQ 60
EDG F+V A I L+ ++WWY ACKCHR+V + G YC GC + V + PRFR+K+
Sbjct: 283 FEDGVFVVYATIGGLVDHEDWWYPACKCHRSVSADSGAFYCKGCAKHVFQMVPRFRVKVN 342
Query: 61 VSDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKK 120
VSD ++ FV+ D +NL+N C +++ K NA P E L G+ +LFKVEK
Sbjct: 343 VSDATNVGVFVVFDGDMQNLLNTPCSSLVSVAKAENAGHYPPEFEK-LKGKKMLFKVEKC 401
Query: 121 VVNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETP 155
+ ++ + VKRVCDD II+++ TP
Sbjct: 402 TSSSIFFDGSFRVKRVCDDPAIIQSFHFVGGQCTP 436
>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:25901653-25904109 | 20130731
Length = 575
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 87/154 (56%), Gaps = 1/154 (0%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQV 61
EDG F+V A + ++ + WWY ACKCHR+V + G +YC GC + V + PR++IK++V
Sbjct: 285 EDGFFVVSAIVSGFVEGEEWWYPACKCHRSVTADSGAYYCKGCDKHVIQMVPRYKIKLRV 344
Query: 62 SDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKV 121
DG + FV+ D L+ K C ++ + K + P I L G+ LFKV+K V
Sbjct: 345 DDGTGDSVFVLFDSDVHYLLEKQCSVLVAKSKGDDVGFYPPEIV-MLKGKRFLFKVDKPV 403
Query: 122 VNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETP 155
++ ++ Y VKRVC DS I+ + N TP
Sbjct: 404 ISGGFFDGSYRVKRVCADSSIVAKFAMNGYNYTP 437
>Medtr3g056270.1 | replication factor-A carboxy-terminal domain
protein | HC | chr3:22409504-22413525 | 20130731
Length = 719
Score = 104 bits (260), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQV 61
++G ++V + ++ +NW+Y AC C+++V +G H+C C R V V PR+ IK++V
Sbjct: 443 QEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSIKVRV 502
Query: 62 SDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKV 121
D D A FV+ D A L NKSC DIL + V PT LV LFKVE K
Sbjct: 503 VDDSDCATFVLFDRDATMLFNKSCADILETHRADEG--VLPTEIGALVNCTYLFKVEFKT 560
Query: 122 VNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETPILAKFTGAFSVLN 168
+E+ + VK+VC D II + + + E K T L+
Sbjct: 561 AISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLS 607
>Medtr4g036240.1 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830642-11833873 | 20130731
Length = 560
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQV 61
++G ++V + ++ +NW+Y AC C+++V +G H+C C R V V PR+ IK++V
Sbjct: 284 QEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSIKVRV 343
Query: 62 SDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKV 121
D D A FV+ D A L NKSC DIL + V PT LV LFKVE K
Sbjct: 344 VDDSDCATFVLFDRDATMLFNKSCADILETHRADEG--VLPTEIAALVNCTYLFKVEFKT 401
Query: 122 VNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETPILAKFTGAFSVLN 168
+E+ + VK+VC D II + + + E K T L+
Sbjct: 402 AISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLS 448
>Medtr4g036240.2 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830210-11833873 | 20130731
Length = 480
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQV 61
++G ++V + ++ +NW+Y AC C+++V +G H+C C R V V PR+ IK++V
Sbjct: 204 QEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSIKVRV 263
Query: 62 SDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKV 121
D D A FV+ D A L NKSC DIL + V PT LV LFKVE K
Sbjct: 264 VDDSDCATFVLFDRDATMLFNKSCADILETHRADEG--VLPTEIAALVNCTYLFKVEFKT 321
Query: 122 VNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETPILAKFTGAFSVLN 168
+E+ + VK+VC D II + + + E K T L+
Sbjct: 322 AISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLS 368
>Medtr4g036240.3 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830210-11833873 | 20130731
Length = 417
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/167 (35%), Positives = 86/167 (51%), Gaps = 2/167 (1%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQV 61
++G ++V + ++ +NW+Y AC C+++V +G H+C C R V V PR+ IK++V
Sbjct: 141 QEGMYVVLGTVKQIVNPENWYYTACMCNKSVYPAEGMHFCEKCNRHVVKVFPRYSIKVRV 200
Query: 62 SDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKV 121
D D A FV+ D A L NKSC DIL + V PT LV LFKVE K
Sbjct: 201 VDDSDCATFVLFDRDATMLFNKSCADILETHRADEG--VLPTEIAALVNCTYLFKVEFKT 258
Query: 122 VNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETPILAKFTGAFSVLN 168
+E+ + VK+VC D II + + + E K T L+
Sbjct: 259 AISPRFEQSFRVKKVCTDGVIINQFKAKWAKEEATFIKNTNEMGSLS 305
>Medtr1g075850.1 | replication factor-A carboxy-terminal domain
protein | LC | chr1:33615520-33612872 | 20130731
Length = 528
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 78/164 (47%), Gaps = 31/164 (18%)
Query: 1 MEDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQ 60
+DG F+V + I L+ ++WWY ACKCHR+V + G YC GC + V + PRFR+K+
Sbjct: 277 FDDGVFVVYSTISGLVDHEDWWYPACKCHRSVSADSGAFYCKGCAKHVFQMVPRFRVKVN 336
Query: 61 VSDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKK 120
VSD ++ + P FE L G+ +LFK+EK
Sbjct: 337 VSDAENAGHY------------------------PAEFE-------KLKGKRMLFKIEKC 365
Query: 121 VVNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETPILAKFTGAF 164
++ + VKRVCDD II+++ + TP AF
Sbjct: 366 TGRSIFFDGSFRVKRVCDDPAIIQSFDTLGGQYTPSKISVAKAF 409
>Medtr6g445520.1 | replication factor-A carboxy-terminal domain
protein | HC | chr6:15886770-15884303 | 20130731
Length = 428
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 85/152 (55%), Gaps = 2/152 (1%)
Query: 6 FIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDGD 65
F+V+A + ++ D WWY AC C++ V+ ++ +C+ C + V +V PR+ IK++V D
Sbjct: 155 FVVKATVKFVIDTDEWWYTACVCNKKVVPDEKMFFCAKCNKHVIHVCPRYMIKVRVIDET 214
Query: 66 DLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKVVNLY 125
D A FV+ D A L+ K+ D++ + + + I +LV LFKVE +
Sbjct: 215 DSATFVIFDRDATLLLKKTAADVIESMGSDESGTLPKEIS-SLVESTFLFKVETNISTDA 273
Query: 126 NYEEPYHVKRVCDDSDIIKAYMSNSSAETPIL 157
+E+ Y V+R+ ++ D++K + + E P++
Sbjct: 274 RFEKSYRVRRISNNVDLLKRF-TGVPTEAPVV 304
>Medtr4g046077.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:16158485-16160769 | 20130731
Length = 405
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 77/154 (50%), Gaps = 18/154 (11%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQV 61
EDG F+V A + ++ WY ACKCHR+V + +YC GC + V + PR+R+KI V
Sbjct: 169 EDGTFVVYATFNGFVDGEDCWYPACKCHRSVAPDSEAYYCKGCVKNVFQMVPRYRVKINV 228
Query: 62 SDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKV 121
SD +A FVM +N++N SC +++ K NA T L+ R L
Sbjct: 229 SDATSVAVFVMFAGDVQNILNLSCSSLVSASKAENA-GFYSTEFAKLIRRCCL------- 280
Query: 122 VNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETP 155
VKRVCD+ +I+++ S TP
Sbjct: 281 ----------RVKRVCDEPSVIQSFDSIGVEHTP 304
>Medtr4g040040.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:14260390-14261092 | 20130731
Length = 168
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 4/166 (2%)
Query: 7 IVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDGDD 66
I+ A + + DD WW+L+C CH V+ + +YC C + V + PRFRI V+D
Sbjct: 3 IIMATVDQYVTDDGWWFLSCICHEQVVPDSPAYYCERCNKHVLMITPRFRITFHVTDNTG 62
Query: 67 LAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKVVNLYN 126
A F+M D +A C +L ++ P +VG+ LFKV KV +
Sbjct: 63 SATFLMHDSVAAEFFGIPCSKMLEFGENVGMSSYVPDELLNMVGKCYLFKVFSKVGAGCD 122
Query: 127 YEEPYHVKRVCDDSDIIKAYMSNSSA----ETPILAKFTGAFSVLN 168
E+ Y + ++ DD +++ + ++S +TP ++K+ L+
Sbjct: 123 GEKCYPISKINDDEELLGRFKRHNSVVIKLDTPSVSKYMSILEKLH 168
>Medtr8g479260.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:33777150-33779789 | 20130731
Length = 555
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 74/141 (52%)
Query: 6 FIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDGD 65
++V I ++ +N+WY AC C +AVI + YC C R V V R+ ++++ D
Sbjct: 292 YVVLGTIKRIVNRENFWYTACICSKAVIPDSQMFYCEKCDRHVKKVFSRYCLRVRAIDHT 351
Query: 66 DLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKVVNLY 125
D A V+ D A L NKSC+D+L E + P ++G+ LFKVE KV
Sbjct: 352 DCATLVIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKVETKVDQNP 411
Query: 126 NYEEPYHVKRVCDDSDIIKAY 146
+E+ + V+++C D+I +
Sbjct: 412 RFEQSFRVRKICAMPDVINEF 432
>Medtr2g008650.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:1569207-1566568 | 20130731
Length = 555
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 74/141 (52%)
Query: 6 FIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDGD 65
++V I ++ +N+WY AC C +AVI + YC C R V V R+ ++++ D
Sbjct: 292 YVVLGTIKRIVNRENFWYTACICSKAVIPDSQMFYCEKCDRHVKKVFSRYCLRVRAIDHT 351
Query: 66 DLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKVVNLY 125
D A V+ D A L NKSC+D+L E + P ++G+ LFKVE KV
Sbjct: 352 DCATLVIFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKVETKVDQNP 411
Query: 126 NYEEPYHVKRVCDDSDIIKAY 146
+E+ + V+++C D+I +
Sbjct: 412 RFEQSFRVRKICAMPDVINEF 432
>Medtr0042s0170.1 | replication factor-A carboxy-terminal domain
protein | LC | scaffold0042:77181-79334 | 20130731
Length = 400
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 29 HRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDGDDLAEFVMPDLIAENLINKSCMDI 88
HR V + G +YC GC + V + PR+++KI+V DGD FV+ D NL+ K C D+
Sbjct: 143 HRGVTPDSGAYYCKGCSKHVFQMVPRYKVKIRVDDGDGCVVFVVFDGDMHNLLGKQCSDL 202
Query: 89 LNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKVVNLYNYEEPYHVKRVCDDSDIIKAYMS 148
++ K N P L G LLFKVEK V ++ Y V+R+C D+ +I+++ +
Sbjct: 203 VSAAKAENV-GFYPDEHLKLKGMYLLFKVEKSSVASVLFDGSYRVRRICSDAAVIESFTA 261
Query: 149 NSS 151
++
Sbjct: 262 QAT 264
>Medtr2g048560.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:21416239-21412307 | 20130731
Length = 549
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 6 FIVRAKIMSLLQDDNWWYLACK-CHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDG 64
F V + ++ D +WWY +C C++ V ++ ++CS C + V V PR+ IK++V D
Sbjct: 289 FAVFGTVNVIVDDSDWWYTSCVVCNKKVYPDEKMYFCSKCNKHVLNVTPRYMIKMRVVDH 348
Query: 65 DDLAEFVMPDLIAENLINKSCMDILNEVK-DPNAFEVAPTIEDTLVGRDLLFKVEKKVVN 123
D A FV+ D A L K+C D++ +A EV I +V + LFKVE + +
Sbjct: 349 TDSATFVLFDRDAAELFKKTCADMIESCGMGTDASEVPKDIL-AMVEKSYLFKVETNLGS 407
Query: 124 LYNYEEPYHVKRVCDDSDIIKAYMS 148
YE+ Y VKRV D +++ + +
Sbjct: 408 STMYEKSYRVKRVTADPVLVEKFQT 432
>Medtr7g110100.1 | replication factor-A carboxy-terminal domain
protein | HC | chr7:45127464-45130150 | 20130731
Length = 526
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 7 IVRAKIMSLLQDDNWWYLAC-KCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDGD 65
IV A I+ + + +W+Y AC KC + + G +C C + N V PRF++ +QV D
Sbjct: 290 IVLASIIGIEAEYSWYYDACTKCAGRIKIIAGRMFCPRCNQSRNAV-PRFKLHVQVMDNT 348
Query: 66 DLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKVVNLY 125
F++ D N + KS D+++ N + P+ D LVG+ +LFKVE NL+
Sbjct: 349 GSTSFILFDRNVSNYVGKSVQDLIDSQGQGNNDKGYPSDLDVLVGKKMLFKVEITDGNLH 408
Query: 126 NYEEPYHVKRVCDDSDIIKAY 146
Y VKR DD D+I +
Sbjct: 409 LSWRNYGVKRTTDDPDLISQF 429
>Medtr3g081610.1 | transmembrane protein, putative | LC |
chr3:36944252-36945254 | 20130731
Length = 221
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 30/145 (20%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQV 61
EDG FIV A I ++WWY ACKCHR+V + G +YC C + V ++ PR
Sbjct: 53 EDGLFIVCATI----DGEDWWYPACKCHRSVTPDSGAYYCKDCVKHVFHMVPR------- 101
Query: 62 SDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKV 121
LI C +++ K NA PT + L GR +LFKVE+
Sbjct: 102 ------------------LICIPCSTLVSVSKAENA-GFYPTHFNKLKGRKMLFKVERCT 142
Query: 122 VNLYNYEEPYHVKRVCDDSDIIKAY 146
+ + + VKRVC+++ +++ +
Sbjct: 143 SVSFMSDGSFRVKRVCEEASVLEQF 167
>Medtr4g032585.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:11228071-11229546 | 20130731
Length = 286
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 4 GEFIVRAKIMSLLQDDNWWYLAC-KCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVS 62
G IV A I + + W+Y AC KC + + G +C C + N V PRF++ +QV
Sbjct: 31 GNVIVFASICGIEPEYGWYYDACTKCAGRITIVAGRMFCPRCKQSRN-VVPRFKLHVQVM 89
Query: 63 DGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKVV 122
D F++ D N + +S D+++ + P + LVG+ +LFKV+
Sbjct: 90 DTTGSTSFILFDRNVSNYVGRSVQDLIDAQGQGDNSLGYPADLEVLVGKKMLFKVDITNG 149
Query: 123 NLYNYEEPYHVKRVCDDSDIIKAYM 147
NL + Y VKR DD+++I+ ++
Sbjct: 150 NLLHNWRNYGVKRTSDDAELIQMFI 174
>Medtr4g032565.1 | replication factor-A carboxy-terminal domain
protein | LC | chr4:11217564-11219039 | 20130731
Length = 286
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 73/145 (50%), Gaps = 2/145 (1%)
Query: 4 GEFIVRAKIMSLLQDDNWWYLAC-KCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVS 62
G IV A I + + W+Y AC KC + + G +C C + N V PRF++ +QV
Sbjct: 31 GNVIVFASICGIEPEYGWYYDACTKCAGRITIVAGRMFCPRCKQSRNAV-PRFKLHVQVM 89
Query: 63 DGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKVV 122
D F++ D N + +S D+++ + P + LVG+ +LFKV+
Sbjct: 90 DTTGSTSFILFDRNVSNYVGRSVQDLIDAQGQGDNSLGYPADLEVLVGKKMLFKVDITNG 149
Query: 123 NLYNYEEPYHVKRVCDDSDIIKAYM 147
NL + Y VKR DD+++I+ ++
Sbjct: 150 NLLHNWRNYGVKRTSDDAELIQMFI 174
>Medtr6g051890.1 | replication factor-A carboxy-terminal domain
protein | HC | chr6:18071124-18068908 | 20130731
Length = 399
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQV 61
+DG F+V + L++D+ W+Y AC CHR+++ + G +YC C V ++ PR ++ I V
Sbjct: 200 KDGLFVVSGIVDGLVEDEEWYYPACTCHRSLMPDYGAYYCKDCAEHVFHMVPRCKVNIHV 259
Query: 62 SDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIE 105
+DG D A FV+ D + +S + + E+++ + V PT++
Sbjct: 260 TDGTDEAVFVLFDYD----VKRSSV-VAGEIQNLGSHSVTPTVQ 298
>Medtr1g105785.1 | replication factor-A carboxy-terminal domain
protein | HC | chr1:47732917-47735741 | 20130731
Length = 566
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLAC-KCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQ 60
E + IV A I + + +W+Y AC KC V G YC C N V PRF++ +Q
Sbjct: 285 EQCQGIVLATICGIESEYSWYYQACTKCAGRVRTVAGRLYCGKCNTGRNAV-PRFKLHVQ 343
Query: 61 VSDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKK 120
V D F++ D + +N++ D+++ PN P+ D+ VG+ +LFKVE
Sbjct: 344 VMDNTGSTSFILFDRNVSSYVNRTVQDMID--AQPNNSSDYPSDLDSFVGKRMLFKVEVS 401
Query: 121 VVNLYNYEEPYHVKRVCDDSDIIKAY 146
NL + Y VKR + D+I +
Sbjct: 402 DGNLLHNWRNYAVKRTTAEEDVINQF 427
>Medtr4g134870.1 | AP2 domain class transcription factor | LC |
chr4:56537430-56539491 | 20130731
Length = 425
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 8/109 (7%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQV 61
E+G F+V K+ L++ WWY A +C+R+V+ G +YC+GC R ++K++V
Sbjct: 161 EEGVFVVGGKVEGLVEGAEWWYSAYRCNRSVLAASGSYYCNGCVRHC-------KVKVKV 213
Query: 62 SDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVG 110
SDG+ V+ D ++ KSC ++ +VK NA + P+ L+G
Sbjct: 214 SDGECKVILVLFDNDVSFIVKKSCAKLVADVKGENA-DFYPSELKNLIG 261
>Medtr1g050500.1 | replication factor-A carboxy-terminal domain
protein | LC | chr1:19683996-19681538 | 20130731
Length = 543
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 9/168 (5%)
Query: 1 MEDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQ 60
+EDG F+V A+++ ++ WWY C C R + + +G +YC C V V R+KI
Sbjct: 203 VEDGLFVVYAEVVECIESHTWWYPMCVCQRILPMRNGAYYCRHCDMSVFKVM--LRVKIL 260
Query: 61 VSDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKK 120
V D D A D + + +K+ PN A +E L G+ LLF V K
Sbjct: 261 VVDDTDAAVLEFFDDLLHGISSKN-----YNALGPNVVATAIGME-LLQGKKLLFIVRKT 314
Query: 121 VVNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETPILAKFTGAFSVLN 168
+ + + V ++ DD +I AY N A + + +KF F+ +
Sbjct: 315 LGFNATSGDAFEVVQITDDQGLINAYRLNCPACSDV-SKFHPTFTAIT 361
>Medtr2g048550.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:21410361-21406613 | 20130731
Length = 495
Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 66/150 (44%)
Query: 6 FIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDGD 65
+IV I LL DD WWY+ C C + V + G +C+ C + V V PR+++K V D
Sbjct: 289 YIVYGNISELLLDDGWWYVGCVCKKRVFPDGGMFFCAKCSKHVFNVKPRYKVKFNVFDHT 348
Query: 66 DLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKVVNLY 125
A F++ D E + ++C +++ + P + LLFKV
Sbjct: 349 GEANFIVFDKALEMFLQRTCAELVGANGMIADVDHVPAELVGMTNNPLLFKVAVDASLDK 408
Query: 126 NYEEPYHVKRVCDDSDIIKAYMSNSSAETP 155
E+ Y VK++ D ++ + P
Sbjct: 409 VAEKVYVVKQMTSDIKSVQEFADLYKIRAP 438
>Medtr7g051400.1 | replication factor-A carboxy-terminal domain
protein | LC | chr7:18001910-18004476 | 20130731
Length = 542
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLAC-KCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQ 60
E + IV A I + + +W+Y AC KC V YC C N VA RF++ +Q
Sbjct: 263 EQCQGIVLATICGIESEYSWYYQACTKCVGRVRTVASRLYCGKCNTGRNAVA-RFKLHVQ 321
Query: 61 VSDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKK 120
V D F++ D +N + D+++ PN P+ D+ VG+ +LFKVE
Sbjct: 322 VIDNTGSTSFILFDRNVSKYVNGTIQDMIDA--QPNNSSDYPSDLDSFVGKQMLFKVEVS 379
Query: 121 VVNLYNYEEPYHVKRVCDDSDIIKAYM 147
NL + Y VKR + D+I ++
Sbjct: 380 DGNLLHNWRNYVVKRTTAEEDVINQFV 406
>Medtr8g062060.1 | DUF223 domain protein | LC |
chr8:25911934-25914219 | 20130731
Length = 530
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQV 61
E G F+V A++ + D W+Y C C+ + E G + C C R V P+FR ++ V
Sbjct: 285 EGGFFVVCARVAGFRKVDQWFYPVCDCNSFMGNEFGFYLCDVCHRTSFNVTPKFRFELSV 344
Query: 62 SDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKV 121
D +A F + D I ++ + C + ++ L GR+ +F V+K
Sbjct: 345 EDDGGVAIFHILDRILLDISSLKCSFLDRKLPLTRGH------LQKLNGRECMFLVKKYH 398
Query: 122 VNLYNYEEPYHVKRVCDDSDIIKAYMSNSSAETPILAKF 160
+ + V RV DDS ++++Y + TP F
Sbjct: 399 AARFLPGYGFDVLRVSDDSKVVRSYYDEGRSYTPSKVSF 437
>Medtr1g492690.1 | hypothetical protein | HC |
chr1:41541171-41539306 | 20130731
Length = 365
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 18 DDNWWYLAC-KCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQVSDGDDLAEFVMPDLI 76
D + AC KC + +G YC +F++ ++V D FV+ D +
Sbjct: 104 DSGRFNRACSKCASRITTINGQIYCD-----------KFKLHLEVIDNTGSTTFVLYDRV 152
Query: 77 AENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKVVNLYNYEEPYHVKRV 136
+ KS L+ + + N+ E+ P + + V + +LFKVE NLY Y V+++
Sbjct: 153 VTQAVGKSAQYFLHAMTEKNSAEIPPEL-NMFVDQRMLFKVEVSDSNLYRNWRSYTVRKL 211
Query: 137 CDDSDIIKAYMS 148
D DII +++
Sbjct: 212 TMDDDIINRFIT 223
>Medtr0032s0020.1 | PIF1-like helicase | LC |
scaffold0032:18195-20915 | 20130731
Length = 586
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 2 EDGEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYVAPRFRIKIQV 61
E G F+V A++ ++ D W+Y C C+ + E G + C C R V P+FR ++ V
Sbjct: 190 EGGFFVVCARVAGFMKVDQWFYPVCDCNSFMGNEFGFYLCDVCHRTSFNVTPKFRFEVSV 249
Query: 62 SDGDDLAEFVMPDLI 76
D +A F + D I
Sbjct: 250 EDDGGVAIFHILDHI 264
>Medtr5g057125.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:23566558-23564881 | 20130731
Length = 298
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 67/147 (45%), Gaps = 27/147 (18%)
Query: 4 GEFIVRAKIMSLLQDDNWWYLACKCHRAVIVEDGHHYCSGCFRRVNYV-APRFRIKIQVS 62
G ++V AKI+ + + W Y++C + CF++V V RF + I V
Sbjct: 84 GAYVVLAKIIGIDTNKKWCYVSC---------------NKCFKKVKPVCTKRFMVHIHVM 128
Query: 63 DGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLLFKVEKKVV 122
D FV+ D + + + + + PT D L +++LFK+E +
Sbjct: 129 DDSGSTTFVLFDGVISQHFGMTAKEQMGMTTND-----YPTEFDNLHDKEMLFKLE---I 180
Query: 123 NLYNYEE---PYHVKRVCDDSDIIKAY 146
N N E+ Y VK++CDD++II +
Sbjct: 181 NQKNVEQRFYTYAVKKMCDDNEIIDEF 207
>Medtr5g093790.1 | hypothetical protein | HC |
chr5:40946221-40950568 | 20130731
Length = 385
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%)
Query: 55 FRIKIQVSDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVGRDLL 114
F++ +QV D ++ D N + +S D+++ N P LVG+ +L
Sbjct: 197 FKLHVQVMDNTGSTSIILFDCNIANYVGRSVQDLIDAQGQANNSLGCPKELGLLVGKQML 256
Query: 115 FKVEKKVVNLYNYEEPYHVKRVCDDSDIIKAYM 147
FKVE NL + + VKR DD+D+IK ++
Sbjct: 257 FKVEITDWNLVHNWRNHGVKRTSDDADLIKRFI 289
>Medtr8g064300.1 | hypothetical protein | HC |
chr8:26955992-26959052 | 20130731
Length = 311
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%)
Query: 51 VAPRFRIKIQVSDGDDLAEFVMPDLIAENLINKSCMDILNEVKDPNAFEVAPTIEDTLVG 110
+ +F++ +QV D ++ D N + +S D+++ N P LVG
Sbjct: 119 LVAKFKLHVQVMDNTGSTSIILFDCNIANYVGRSVQDLIDAQGQANNSLGYPKELGLLVG 178
Query: 111 RDLLFKVEKKVVNLYNYEEPYHVKRVCDDSDIIKAYM 147
+ +LFKVE NL + + VKR DD+D+IK ++
Sbjct: 179 KQMLFKVEITDWNLVHNWRNHGVKRTSDDADLIKRFI 215