Miyakogusa Predicted Gene

Lj0g3v0101139.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101139.2 tr|G7JIC6|G7JIC6_MEDTR Replication factor A
protein OS=Medicago truncatula GN=MTR_4g028320 PE=4
SV=1,28.19,0.000000000009,Nucleic acid-binding proteins,Nucleic
acid-binding, OB-fold-like; no description,Nucleic
acid-bindin,CUFF.5671.2
         (304 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g062030.1 | replication factor-A carboxy-terminal domain p...   119   3e-27
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p...   117   1e-26
Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 | 20...   110   1e-24
Medtr1g075850.1 | replication factor-A carboxy-terminal domain p...   110   2e-24
Medtr3g037500.1 | transmembrane protein, putative | LC | chr3:13...    76   5e-14
Medtr8g062060.1 | DUF223 domain protein | LC | chr8:25911934-259...    75   7e-14
Medtr2g048560.1 | replication factor-A carboxy-terminal domain p...    75   8e-14
Medtr3g056270.1 | replication factor-A carboxy-terminal domain p...    73   3e-13
Medtr2g054710.1 | animal RPA1 domain protein | LC | chr2:2336383...    70   2e-12
Medtr6g039240.1 | animal RPA1 domain protein | LC | chr6:1418076...    70   2e-12
Medtr1g094230.1 | animal RPA1 domain protein | LC | chr1:4243647...    70   4e-12
Medtr4g036240.1 | replication factor-A carboxy-terminal domain p...    69   5e-12
Medtr8g479260.1 | replication factor-A carboxy-terminal domain p...    69   5e-12
Medtr2g008650.1 | replication factor-A carboxy-terminal domain p...    69   5e-12
Medtr8g463820.1 | animal RPA1 domain protein | LC | chr8:2251463...    68   1e-11
Medtr6g051890.1 | replication factor-A carboxy-terminal domain p...    67   2e-11
Medtr8g088810.1 | DUF223 domain protein | LC | chr8:36895897-368...    67   2e-11
Medtr2g062200.1 | DUF223 domain protein | LC | chr2:26248587-262...    66   5e-11
Medtr3g056240.1 | DUF223 domain protein | HC | chr3:22396065-223...    65   8e-11
Medtr8g059025.1 | animal RPA1 domain protein | LC | chr8:2054987...    60   3e-09
Medtr1g052715.1 | DUF223 domain protein | LC | chr1:21677037-216...    59   7e-09
Medtr4g046077.1 | replication factor-A carboxy-terminal domain p...    58   1e-08
Medtr6g069230.1 | animal RPA1 domain protein | LC | chr6:2491560...    57   2e-08
Medtr3g044760.1 | DUF223 domain protein | LC | chr3:14435139-144...    55   6e-08
Medtr2g048550.1 | replication factor-A carboxy-terminal domain p...    55   9e-08
Medtr4g036240.2 | replication factor-A carboxy-terminal domain p...    55   9e-08
Medtr7g110100.1 | replication factor-A carboxy-terminal domain p...    55   1e-07
Medtr7g089660.1 | animal RPA1 domain protein | LC | chr7:3511416...    54   2e-07
Medtr8g467450.1 | animal RPA1 domain protein | LC | chr8:2424111...    54   2e-07
Medtr1g050500.1 | replication factor-A carboxy-terminal domain p...    54   2e-07
Medtr3g452170.1 | DUF223 domain protein | HC | chr3:18995882-189...    54   2e-07
Medtr6g013455.1 | DUF223 domain protein | HC | chr6:4270954-4268...    54   2e-07
Medtr1g105785.1 | replication factor-A carboxy-terminal domain p...    51   1e-06
Medtr7g096440.1 | PIF1-like helicase | LC | chr7:38691556-386937...    50   2e-06
Medtr4g028320.1 | animal RPA1 domain protein | LC | chr4:9767872...    50   2e-06
Medtr8g036090.1 | animal RPA1 domain protein | HC | chr8:1327908...    50   3e-06
Medtr4g471610.1 | animal RPA1 domain protein | HC | chr4:2707183...    50   3e-06
Medtr3g078440.1 | animal RPA1 domain protein | HC | chr3:3535014...    50   3e-06
Medtr4g022520.1 | DUF223 domain protein | HC | chr4:7510297-7517...    50   4e-06
Medtr4g016120.1 | DUF223 domain protein | HC | chr4:4940745-4944...    49   6e-06
Medtr6g465570.1 | animal RPA1 domain protein | LC | chr6:2333006...    49   9e-06

>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr8:25901653-25904109 | 20130731
          Length = 575

 Score =  119 bits (298), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 109/192 (56%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           KIQA + K +   +  +  EG VY I +F+V P+ GSYRAA H Y+I+F   TKV     
Sbjct: 53  KIQAIVRKQLIYVFQKRLREGEVYNISYFSVAPSTGSYRAATHPYKIVFQMTTKVQSCTS 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
            +IP  GLS  + + +       D+LVDV+G +TAVS  R  V+  S  K+++ E+ D +
Sbjct: 113 ATIPLYGLSFTSIVDVSNHTVEYDYLVDVMGLVTAVSEEREYVRDGSVTKMIIFEVTDHS 172

Query: 134 GSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQEF 193
           G +   + G+ V++ + ++S   +  P+VVVQ+AK+K F  K  L  +   + + +N + 
Sbjct: 173 GKIECALFGEYVALWNGFVSKGFEGLPVVVVQFAKVKIFRDKATLQNVKGTTRLIVNPDV 232

Query: 194 EEAKAFRKRMNG 205
            E  AF+ R+ G
Sbjct: 233 PEVIAFKDRLIG 244


>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr5:33436158-33438920 | 20130731
          Length = 517

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/197 (34%), Positives = 104/197 (52%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           KI AS+ K +F  +  K  EG VYE+  F+V P+ GSYR   H Y+I+F   TKV   E 
Sbjct: 53  KIHASVRKQLFYVFQSKLSEGKVYEMSCFSVAPSVGSYRTTLHPYKIVFQMTTKVQACEG 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
            SIP LG+SL     +       D+LVDV+GF+T +S  R  V+     K+++ E+ D +
Sbjct: 113 ASIPSLGISLCKIADVCQHTSDHDYLVDVLGFMTGISVEREYVRDGKVTKMVIFEITDAS 172

Query: 134 GSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQEF 193
           G     + G  V  ++  +       P+++VQ+AK+K F  K  L  ++  + I +N   
Sbjct: 173 GKCECALFGQYVDTLNKLMGKSGGGMPIILVQFAKVKIFRDKASLQNVMNTTRILINPPI 232

Query: 194 EEAKAFRKRMNGHSREI 210
           E+A   RK +   S ++
Sbjct: 233 EQADQIRKSVTFGSMDV 249


>Medtr6g052340.1 | DNA primase | LC | chr6:18273765-18278897 |
           20130731
          Length = 665

 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 108/196 (55%), Gaps = 5/196 (2%)

Query: 11  QEG-KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVV 69
           Q G KI A++ K +   +  K +EG VY++  F V+   G+YR  +H Y+++F  KTKV 
Sbjct: 45  QNGVKIHATIPKQLMYLFQHKLIEGKVYKLSNFTVLLNSGAYRTTHHTYKLIFQMKTKVE 104

Query: 70  P---LECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMM 126
                E   IP  GL+L    Q+ +     ++LVDV+G +T +S  R  V+     KI++
Sbjct: 105 ESHDYEISLIPNHGLTLTDISQITSRTQDYEYLVDVIGLMTGISAEREFVRDGKLTKILV 164

Query: 127 MELYDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVST 186
           +EL D +G     + G+ V  +   +S   +  P++V+Q+AK+K F GK  +  ++  +T
Sbjct: 165 IELTDHSGKCECTLFGNYVDELHKLMSKAVEGSPVIVIQFAKVKIFRGKASIQNVVGSTT 224

Query: 187 -IHLNQEFEEAKAFRK 201
            I+LN  F EA  F++
Sbjct: 225 RIYLNPSFPEALKFKE 240


>Medtr1g075850.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr1:33615520-33612872 | 20130731
          Length = 528

 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 103/197 (52%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           KI A + K +   +  K  EG VY++  F+V P+ GSYR  +H Y+I+F   TKV   E 
Sbjct: 47  KIHAGVRKQLLYVFQSKLSEGKVYQMSCFSVAPSVGSYRTTSHPYKIVFQMTTKVQVCED 106

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
            SIP  G+SL   + +       D+LVDV+GF+T +S  R  V+     K+++ E+ D +
Sbjct: 107 ASIPSFGISLCKIVDVCQHTSDHDYLVDVLGFMTDISAEREYVRDGKVTKMVVFEITDAS 166

Query: 134 GSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQEF 193
           G     + G  V  ++  +   +   P+++VQ+AK+K F  K  L  +I  + I +N   
Sbjct: 167 GKCECALFGQYVDTLNKLMGKSAGGMPIILVQFAKVKIFRDKASLQNVINTTWILINLPI 226

Query: 194 EEAKAFRKRMNGHSREI 210
           E+    RK +   S ++
Sbjct: 227 EQDDQVRKSVTFGSTDV 243


>Medtr3g037500.1 | transmembrane protein, putative | LC |
           chr3:13783344-13781841 | 20130731
          Length = 290

 Score = 75.9 bits (185), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 75/163 (46%)

Query: 11  QEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVP 70
           Q  KIQA L             E  VY +  F ++P  GS R  +H Y+I     T VVP
Sbjct: 2   QGNKIQAYLPTLCMECLGRVVHENCVYVVPNFCLVPNVGSTRVTSHRYKIKILITTTVVP 61

Query: 71  LECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELY 130
            +  +I R G+SL++  ++        HL+DV+G LT++    +     S   ++ +EL 
Sbjct: 62  CDIYTIQRYGVSLMSSAEINERRHGCAHLIDVMGLLTSLHYDYVVDVAESLATVVRLELT 121

Query: 131 DENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFE 173
           DE G     + G  V V  D LS      P  V+QY KI + E
Sbjct: 122 DERGKFECALYGPYVGVFKDLLSGVGSVLPFAVLQYVKICREE 164


>Medtr8g062060.1 | DUF223 domain protein | LC |
           chr8:25911934-25914219 | 20130731
          Length = 530

 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 103/232 (44%), Gaps = 11/232 (4%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           ++ A++      K+    VE  VY I  F+V+P    + + + AYRI+F   T ++   C
Sbjct: 53  RMHATVPPFCVEKFRHMLVENRVYIITMFSVLPNLDEFMSTSSAYRIVFHQDTDLMATTC 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHV-KIMMMELYDE 132
            +IP   LSL+T   L        + VDV+G LTA+      +  ++H+  ++  EL DE
Sbjct: 113 SAIPECRLSLITSADLLKKTRGCSYAVDVIGLLTAMHHEYF-LDSTNHLSSVLKFELTDE 171

Query: 133 NGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQE 192
                  + G  + +  + L       P+VV+Q+A++    G  ++     ++ +  N  
Sbjct: 172 RTKFECALTGKYIGIFHELLKKVQLRLPIVVIQFARVIAENGTPVVCAEKDITKVSFNPT 231

Query: 193 FEEAKAFRKRMNGHSREIEGHVGDIDFFDFAYPMIDDVKI----VYPSVDLK 240
             E   F+ R+      I G    I  F+  + M  DV +    +YP   +K
Sbjct: 232 IPEVTQFQDRL-----LIAGPKSSIVKFNPNFRMSVDVSLSFSKMYPKKSIK 278


>Medtr2g048560.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr2:21416239-21412307 | 20130731
          Length = 549

 Score = 75.1 bits (183), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 92/194 (47%)

Query: 10  HQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVV 69
           ++  +I AS+ + +  K+  +  E  V+ I  F+V    GSYR A H Y+I F   TK+ 
Sbjct: 49  NKGDRINASVRRTLIYKYEKELREDRVFSIGNFSVASNVGSYRTARHPYKINFQYGTKIK 108

Query: 70  PLECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMEL 129
             + + +P     +    ++      +D+L+DV+G L AV   +   +  S  K++ +EL
Sbjct: 109 QCDDKFVPADIYVIGDSREIFQSEYDTDYLIDVMGMLKAVGVEKSYTRNGSQSKMIPIEL 168

Query: 130 YDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHL 189
             +       + G  V  ++ +L+S   E  +V V   KIK F+G+  +   I  + +  
Sbjct: 169 DYDGFRFKVTLFGPYVDELNAFLASGETENVVVAVLLTKIKIFQGQATIQNTINATKVLF 228

Query: 190 NQEFEEAKAFRKRM 203
           N  F  A   +KRM
Sbjct: 229 NPTFTAALLLKKRM 242


>Medtr3g056270.1 | replication factor-A carboxy-terminal domain
           protein | HC | chr3:22409504-22413525 | 20130731
          Length = 719

 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 85/190 (44%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           KI AS+ K ++ K+  +  EG VY      V    GSY+  +H Y++     TK +PL  
Sbjct: 212 KIHASIKKTLWYKFQSEIREGKVYSFENMGVAANGGSYKTTHHPYKLNVQFGTKCLPLCG 271

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +       V    +   +   D+LVDV+G LT V   R   +  S  K+ ++ +  + 
Sbjct: 272 ALVSGSDFKFVPIFDIVGGSYDCDYLVDVIGMLTGVGTEREYERNGSATKLNVIAMEADG 331

Query: 134 GSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQEF 193
             +   + G  V  ++ +L++      +V +Q AK+K F+    +   +  + +  N   
Sbjct: 332 YKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCLNCTRLKFNPVC 391

Query: 194 EEAKAFRKRM 203
            E  AF+ RM
Sbjct: 392 AEGTAFKNRM 401



 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 73/157 (46%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ K ++ K+  +  EG VY      V    GSY+  +H Y++ F   TK +PL  
Sbjct: 53  RIHASIKKTLWYKFQSEIREGKVYSFENMGVAANGGSYKTTHHPYKLNFQFGTKCLPLFG 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +       V    +   +   D+LVDV+G LT V   R   +  S  K+ ++ +  + 
Sbjct: 113 ALVSGSDFKFVPISDIVGGSYDCDYLVDVIGMLTGVGTEREYERNGSATKLNVIAMEADG 172

Query: 134 GSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIK 170
             +   + G  V  ++ +L++      +V +Q AK+K
Sbjct: 173 YKLQCTLFGTYVDKLNTFLATGETANVVVSIQLAKVK 209


>Medtr2g054710.1 | animal RPA1 domain protein | LC |
           chr2:23363838-23365033 | 20130731
          Length = 271

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 12/197 (6%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I ASL K +  K+ +   EG  +      V    G YR   H Y++ F   +KV  L  
Sbjct: 55  RIHASLKKTLIYKFRNDLFEGKCFSFENMGVTNNGGGYRTTKHTYKLNFQFSSKVKYLPA 114

Query: 74  ESIPRLGLSLVTPLQLETIAD------PSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMM 127
            +I +      +P QL  I++       +D+LVD++G LT V   R   +  +  K+ ++
Sbjct: 115 LTITK------SPYQLVPISEFIGGTYDTDYLVDIIGVLTGVGSERERERNGNMTKLNVI 168

Query: 128 ELYDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTI 187
           EL      +     G  V  ++ +++S   +  +V++Q AK K F+ K  +   I  + +
Sbjct: 169 ELEAGGFKIQCTFFGSYVDDLNSFIASGDIQNAMVIIQLAKAKSFQDKIHIQNCIGCTKV 228

Query: 188 HLNQEFEEAKAFRKRMN 204
                 + A + R R++
Sbjct: 229 IFKPICDAAVSMRNRLS 245


>Medtr6g039240.1 | animal RPA1 domain protein | LC |
           chr6:14180761-14182238 | 20130731
          Length = 289

 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ + +  K+ ++  EG V+ I  FNV    GSYR + + Y++ F+  TKV   + 
Sbjct: 53  RIGASIRRTLIYKFKEQLQEGMVFTISSFNVASNSGSYRPSRNEYKLNFTINTKVKLSKT 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +P    S      +   +  +++LVDV+G +  V   R                Y+ +
Sbjct: 113 VLVPTNVYSFTPAPDVFNESYDNNYLVDVIGVMIGVGVER---------------EYERD 157

Query: 134 GSMSF--VVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQ 191
           G+  F   + G+ V  ++ +LSS   +  +V +   K+K F+GK  L      + I  N 
Sbjct: 158 GTYRFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITFNP 217

Query: 192 EFEEAKAFRK 201
           E  E K  RK
Sbjct: 218 EIGETKELRK 227


>Medtr1g094230.1 | animal RPA1 domain protein | LC |
           chr1:42436471-42437983 | 20130731
          Length = 303

 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ + +  K+ ++  EG V+ I  FNV    GSYR + + Y++ F+  TKV   + 
Sbjct: 53  RIGASIRRTLIYKFKEQLQEGMVFTISSFNVASNSGSYRPSRNEYKLNFTINTKVKLSKT 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +P    S      +   +  +++LVDV+G +  V   R                Y+ +
Sbjct: 113 VLVPTNVYSFTPAPDVFNESYDNNYLVDVIGVMIGVGVER---------------EYERD 157

Query: 134 GSMSF--VVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQ 191
           G+  F   + G+ V  ++ +LSS   +  +V +   K+K F+GK  L      + I  N 
Sbjct: 158 GTYRFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALRNAFSYTRITFNP 217

Query: 192 EFEEAKAFRK 201
           E  E K  RK
Sbjct: 218 EMGETKEIRK 227


>Medtr4g036240.1 | replication factor-A carboxy-terminal domain
           protein | HC | chr4:11830642-11833873 | 20130731
          Length = 560

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 85/190 (44%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ K +  K+  +  EG VY      V    GSY+  ++ Y++ F   TK +PL  
Sbjct: 53  RIHASIKKTLLYKFQSEIREGKVYSFENMGVAANGGSYKTTHYPYKLNFQFGTKCLPLCG 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +       V    +   +   D+LVDV+G LT V   R   +  S  K+ ++ +  + 
Sbjct: 113 ALVSGSDFKFVPISDIVGGSYDCDYLVDVIGMLTGVGTEREYERNGSATKLNVIAMEADG 172

Query: 134 GSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQEF 193
             +   + G  V  ++ +L++      +V +Q AK+K F+    +   +  + +  N   
Sbjct: 173 YKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKVFQDNIHIQNCLNCTRLKFNPVC 232

Query: 194 EEAKAFRKRM 203
            E  AF+ RM
Sbjct: 233 VEGTAFKNRM 242


>Medtr8g479260.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr8:33777150-33779789 | 20130731
          Length = 555

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 12/197 (6%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I ASL K +  K+ +   EG  +      V    G YR   H Y++ F   +KV  L  
Sbjct: 55  RIHASLKKTLIYKFRNDLFEGKCFSFENMGVANNGGGYRTTKHTYKLNFQLSSKVKYLPA 114

Query: 74  ESIPRLGLSLVTPLQLETIAD------PSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMM 127
            +I +      +P QL  I++       +D+LVD++G LT V   R   +  +  K+ ++
Sbjct: 115 LTITK------SPYQLVPISEVIGGTYDTDYLVDIIGVLTGVGSERELERNGNMTKLNVI 168

Query: 128 ELYDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTI 187
           EL      +   + G  V  ++ +++S      +V++Q AK K F+ K  +   I  + +
Sbjct: 169 ELEAGGFKIQCTLFGSYVDDLNSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCIGCTKV 228

Query: 188 HLNQEFEEAKAFRKRMN 204
                 + A + R R++
Sbjct: 229 IFKPTCDAAVSMRNRLS 245


>Medtr2g008650.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr2:1569207-1566568 | 20130731
          Length = 555

 Score = 68.9 bits (167), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 12/197 (6%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I ASL K +  K+ +   EG  +      V    G YR   H Y++ F   +KV  L  
Sbjct: 55  RIHASLKKTLIYKFRNDLFEGKCFSFENMGVANNGGGYRTTKHTYKLNFQFSSKVKYLPA 114

Query: 74  ESIPRLGLSLVTPLQLETIAD------PSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMM 127
            +I +      +P QL  I++       +D+LVD++G LT V   R   +  +  K+ ++
Sbjct: 115 LTITK------SPYQLVPISEVIGGTYDTDYLVDIIGVLTGVGSERELERNGNMTKLNVI 168

Query: 128 ELYDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTI 187
           EL      +   + G  V  ++ +++S      +V++Q AK K F+ K  +   I  + +
Sbjct: 169 ELEAGGFKIQCTLFGSYVDDLNSFIASGDIPNAIVIIQLAKAKSFQDKIHVQNCIGCTKV 228

Query: 188 HLNQEFEEAKAFRKRMN 204
                 + A + R R++
Sbjct: 229 IFKPTCDAAVSMRNRLS 245


>Medtr8g463820.1 | animal RPA1 domain protein | LC |
           chr8:22514633-22516142 | 20130731
          Length = 283

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 17/190 (8%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ + +  K+ ++  EG V+ I  F+V    GSYR + + Y++ F+  TKV   + 
Sbjct: 53  RIGASIRRTLIYKFKEQLQEGMVFTISSFDVASNSGSYRPSRNEYKLNFTINTKVKLSKT 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +P    S      +   +  +++LVDV+G +  V   R                Y+ +
Sbjct: 113 VLVPTNVYSFTPAPDVFNESYDNNYLVDVIGVMIGVGVER---------------EYERD 157

Query: 134 GSMSF--VVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQ 191
           G+  F   + G+ V  ++ +LSS   +  +V +   K+K F+GK  L      + I  N 
Sbjct: 158 GTYRFKCTLFGEYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSSTRITFNP 217

Query: 192 EFEEAKAFRK 201
           E  E K  RK
Sbjct: 218 EIGETKELRK 227


>Medtr6g051890.1 | replication factor-A carboxy-terminal domain
           protein | HC | chr6:18071124-18068908 | 20130731
          Length = 399

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 4/108 (3%)

Query: 13  GKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLE 72
           GKI  ++ K +   +    V+G VY+I +F+V P+ GSYR+  H ++I+F   TKV  LE
Sbjct: 56  GKIHVTVRKQLLYLFQHLLVKGKVYKIAYFSVAPSVGSYRSTLHPHKIVFQMNTKV--LE 113

Query: 73  CES--IPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKG 118
           CE+  I   GL+     ++ +  D  D+L DV+G +T +S  RI V G
Sbjct: 114 CENSLISPCGLTFSNISKICSHTDEYDYLFDVMGVMTDISVERIFVHG 161


>Medtr8g088810.1 | DUF223 domain protein | LC |
           chr8:36895897-36893498 | 20130731
          Length = 306

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 25/208 (12%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ + +  K+ ++  EG V+ I  F+V    GSYR +++ Y++ F+  TKV     
Sbjct: 53  QIGASIRRTLIYKFKEQLQEGMVFTISSFDVASNSGSYRPSHNEYKLNFTINTKV----- 107

Query: 74  ESIPRLGLSLVTPLQLETIADPSD---------HLVDVVGFLTAVSPVRIDVKGSSHVKI 124
               +L  +++ P+ + +     D         +LVDV+G +  V   R   +  +  K+
Sbjct: 108 ----KLSKTILVPINVYSFTPAPDVFNESYDNNYLVDVIGVIIGVGVEREYEREGTKTKM 163

Query: 125 MMMELYDENG-SMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIP 183
            ++EL D NG      + G+ V  ++  LSS   +  +V +   K+K F+GK  L   + 
Sbjct: 164 NVIEL-DSNGYRFKCTLFGEYVEELNSLLSSDESQNVVVAIMLTKVKLFQGKPALQNALS 222

Query: 184 VSTIHLNQEFEEAKAFRKRMNGHSREIE 211
            + I  N E  E K  RKR     REI+
Sbjct: 223 STRITFNPEIGETKELRKR-----REID 245


>Medtr2g062200.1 | DUF223 domain protein | LC |
           chr2:26248587-26247742 | 20130731
          Length = 185

 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 76/161 (47%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           KI A++ + +  K+     EG VY +  F V    GSYR   H Y++ F   TKV     
Sbjct: 10  KIHATVRRTLIYKFEKDLQEGKVYSMSGFGVAANLGSYRTTKHEYKLNFQFNTKVKLCGK 69

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
            S+P     +   + +      +D+LVDV+G LT V   R   +  +  K++ M+L  + 
Sbjct: 70  NSVPDDIYPISNSIVVFNSEYDTDYLVDVMGMLTGVGMQREYERNGAKTKMVAMKLNYDG 129

Query: 134 GSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEG 174
                 + G     ++ ++++    K +VVV  AK+K ++G
Sbjct: 130 FKFKVTLFGQYADELNAFVAAGETNKVIVVVLLAKVKIWQG 170


>Medtr3g056240.1 | DUF223 domain protein | HC |
           chr3:22396065-22393475 | 20130731
          Length = 323

 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 75/159 (47%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ K ++ K+  +  EG VY      V    GSY+  +H Y++ F   TK +PL  
Sbjct: 53  RIHASIKKTLWYKFQSEIREGKVYSFENMGVAANGGSYKTTHHPYKLNFQFGTKCLPLCG 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +       V    +   +   D+LVDV+G LT V   R   +  S  K+ ++ +  + 
Sbjct: 113 ALVSGSDFKFVPISDIVGGSYDCDYLVDVIGMLTGVGTEREYERNGSATKLNVIAMEADG 172

Query: 134 GSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKF 172
             +   + G  V  ++ +L++      +V +Q AK+K+F
Sbjct: 173 YKLQCTLFGTYVDELNTFLATGETANVVVSIQLAKVKRF 211


>Medtr8g059025.1 | animal RPA1 domain protein | LC |
           chr8:20549873-20550376 | 20130731
          Length = 138

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 13  GKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLE 72
            KI AS+ K +   +  K  EG VY++ FF+V P+ GSYR   H Y+++F  KTKV   E
Sbjct: 52  AKIHASVRKQLLYVFQPKLSEGKVYKMSFFSVAPSVGSYRTTLHPYKLVFQMKTKVQVSE 111

Query: 73  CESIPRLGLSLVTPLQLETIADPSDHLVD 101
              IP  G+S      L  IAD   H V+
Sbjct: 112 SVLIPTYGVS------LSKIADVCGHDVE 134


>Medtr1g052715.1 | DUF223 domain protein | LC |
           chr1:21677037-21675057 | 20130731
          Length = 334

 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 92/204 (45%), Gaps = 4/204 (1%)

Query: 10  HQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVV 69
           +Q   I AS+ K +  ++ D+F +G++Y I    V     +++   H Y++   G T + 
Sbjct: 8   NQGVTIHASVRKHLLPQFKDQFEKGSIYVIEKLMVAQNDPTFKTTPHKYKLNLMGGTTIF 67

Query: 70  PL-ECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMME 128
            L +   IP+     +T + +       D L+DV+G +     +++  K     K+M   
Sbjct: 68  KLKDSNEIPKRHFQFMTFVDIMN-CHKEDRLIDVIGHVVEKDELKVTEKNGKTNKVMDAT 126

Query: 129 LYDENGSMSFVVL-GDCVSVVSDYLSSHSKEKPLVV-VQYAKIKKFEGKNLLHTLIPVST 186
           L D +G+     L  D    +  +L SH    P V+ +Q  K+KK+ G   +      + 
Sbjct: 127 LEDLDGNRIHCTLWDDYAEQLKRFLESHDPNLPAVILIQMCKLKKYFGAMGISNAFYGTK 186

Query: 187 IHLNQEFEEAKAFRKRMNGHSREI 210
           +  + E  E  ++ +RMN  + E+
Sbjct: 187 LLFDVELPEVASYLERMNEANVEL 210


>Medtr4g046077.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr4:16158485-16160769 | 20130731
          Length = 405

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 62/112 (55%)

Query: 66  TKVVPLECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIM 125
           TKV   E  +IP+ G+SL   + +       D+LVDVVG +T +S  R  ++     K++
Sbjct: 3   TKVQVSESFTIPKYGVSLTKLVDVCAHTYDYDYLVDVVGLMTGISNEREYIRDGKVTKMV 62

Query: 126 MMELYDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNL 177
           + +L D++GS    + G  V  ++  +       P+V+VQ+AK+K F+G +L
Sbjct: 63  VFQLTDDSGSCECALFGKYVDALNKLMRKAVDGMPVVLVQFAKVKIFKGISL 114


>Medtr6g069230.1 | animal RPA1 domain protein | LC |
           chr6:24915605-24909459 | 20130731
          Length = 356

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 88/193 (45%), Gaps = 3/193 (1%)

Query: 11  QEG-KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVV 69
           +EG KIQAS+       +     E   Y    F+V+         ++++R++F   T+V+
Sbjct: 145 REGNKIQASVPLQCIEVFNHILEENRGYVFSDFHVVSNIADMMTTHNSHRLIFHSNTEVI 204

Query: 70  PLECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMEL 129
             +  +I + GLS+     +        +LVDV+GFLT V P  +D        ++  EL
Sbjct: 205 FTDIPAIDKFGLSIHGSEAISKHVFGYSYLVDVIGFLTDVHPEYVDDPFGRLSTVLRFEL 264

Query: 130 YDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHL 189
              N      + G  V          S+  P+VV+Q A+I +  G  ++ ++  ++ + +
Sbjct: 265 --TNLRFQCALYGKVVRSFQLMFDKVSEGLPVVVLQLARIVRDGGSIIVQSVKNITRVFV 322

Query: 190 NQEFEEAKAFRKR 202
           N +FEEA   R R
Sbjct: 323 NPDFEEASRSRMR 335


>Medtr3g044760.1 | DUF223 domain protein | LC |
           chr3:14435139-14437639 | 20130731
          Length = 444

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 73/162 (45%), Gaps = 8/162 (4%)

Query: 11  QEG-KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVV 69
           Q+G +IQA++      ++ + F E  VY    F V+P   S R  +H +R+    +T VV
Sbjct: 49  QDGNRIQATIPPDCVDRFQNTFHENRVYMFSNFKVLPNDRSTRVTSHNHRLKLWEETVVV 108

Query: 70  PLECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMEL 129
             +   I R G S  +  Q+        HL+DV G LT+   +  D    +   +  +  
Sbjct: 109 NHDGYIIQRFGFSFFSSAQILEHQHGCGHLIDVFGLLTS---LHYDFVVDARQNLATI-- 163

Query: 130 YDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKK 171
               G++  V+ G  +      LS      P+VV+Q+AKI K
Sbjct: 164 --ARGTIECVLYGRFIGFFKGLLSRFGSALPVVVIQFAKICK 203


>Medtr2g048550.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr2:21410361-21406613 | 20130731
          Length = 495

 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 82/190 (43%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           KI AS+  +++ K+ D   E N+Y +    V    G  R   H Y +LF   T+V     
Sbjct: 53  KIHASVHSSLYWKFHDLIKENNIYIVSNVKVDRNVGIMRTTPHPYVLLFQMNTRVKKAYF 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +         P      A   D L DV+G LT V   +ID +G++  K+ ++E+  E 
Sbjct: 113 ADVGPEFYRFNDPQMYFDTAYDRDCLGDVIGMLTDVRVKKIDAEGAACDKLAIIEMNHEG 172

Query: 134 GSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQEF 193
             +   + G  V  ++++++       +V V +AK++      L+ + +  S +  N  F
Sbjct: 173 CFIQCSLFGTFVDQLNNFVAKGDISNVIVAVLFAKVEYVIAGKLVISTVTGSKLVFNPLF 232

Query: 194 EEAKAFRKRM 203
             A   +  M
Sbjct: 233 TTAIDLKGSM 242


>Medtr4g036240.2 | replication factor-A carboxy-terminal domain
           protein | HC | chr4:11830210-11833873 | 20130731
          Length = 480

 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%)

Query: 49  GSYRAANHAYRILFSGKTKVVPLECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTA 108
           GSY+  ++ Y++ F   TK +PL    +       V    +   +   D+LVDV+G LT 
Sbjct: 8   GSYKTTHYPYKLNFQFGTKCLPLCGALVSGSDFKFVPISDIVGGSYDCDYLVDVIGMLTG 67

Query: 109 VSPVRIDVKGSSHVKIMMMELYDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAK 168
           V   R   +  S  K+ ++ +  +   +   + G  V  ++ +L++      +V +Q AK
Sbjct: 68  VGTEREYERNGSATKLNVIAMEADGYKLQCTLFGTYVDELNTFLATGETANVVVSIQLAK 127

Query: 169 IKKFEGKNLLHTLIPVSTIHLNQEFEEAKAFRKRM 203
           +K F+    +   +  + +  N    E  AF+ RM
Sbjct: 128 VKVFQDNIHIQNCLNCTRLKFNPVCVEGTAFKNRM 162


>Medtr7g110100.1 | replication factor-A carboxy-terminal domain
           protein | HC | chr7:45127464-45130150 | 20130731
          Length = 526

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 3/207 (1%)

Query: 13  GKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLE 72
           GKIQA+  K +  K      +G  YEI    V   +  YR   H +++    +TK   ++
Sbjct: 52  GKIQATAKKTLIPKIRSLVQDGAAYEIQNVLVAHNEIRYRCTGHRWKLNLIDQTKFTKID 111

Query: 73  CESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDE 132
           C +IP      V P +    +   D  VDV+G +     ++          ++ + L D 
Sbjct: 112 CNTIPEYHFEFV-PFKEILESTKEDRHVDVIGRVVERDSLKEKEVLGKKSMVLDITLEDT 170

Query: 133 NGSMSFVVLGDCVSVVSD-YLSSHSKEKP-LVVVQYAKIKKFEGKNLLHTLIPVSTIHLN 190
            G+     L D  ++  D YL+ H    P +VV+   K+KK+     +      + + L+
Sbjct: 171 EGNRIHCSLWDTYAIRMDAYLTVHDPNSPVIVVIHLCKLKKYYATMGISNAFYGTKLILD 230

Query: 191 QEFEEAKAFRKRMNGHSREIEGHVGDI 217
            +    K F  +++G   E+   V  I
Sbjct: 231 DDHPVVKEFLSKIDGADVEVTQGVSQI 257


>Medtr7g089660.1 | animal RPA1 domain protein | LC |
           chr7:35114160-35121568 | 20130731
          Length = 236

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ + +  K+ ++  EG V+ I  FNV    GSYR + + Y++ F+  TKV   + 
Sbjct: 53  RIGASIRRTLIYKFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKLSKT 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +P    S      +   +  +++LVDV+G +  V                + + Y+ +
Sbjct: 113 VLVPTNVYSFTPAPNVFNESYDNNYLVDVIGVMIGVG---------------VEKEYERD 157

Query: 134 GSMSF--VVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEG 174
           G+  F   + G+ V  ++ +LSS   +  +V +   K+K F+ 
Sbjct: 158 GTYRFKCTLFGEYVEELNSFLSSGESQNVVVAIMLTKVKLFQA 200


>Medtr8g467450.1 | animal RPA1 domain protein | LC |
           chr8:24241111-24240561 | 20130731
          Length = 142

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 6/88 (6%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           KI A++ K +   +  K  E + Y++F+F++ P  G Y      ++++F  KTKV  +E 
Sbjct: 53  KIHATVRKQLLYVFQKKLAEEDAYKMFYFSIAPNVGYYHTTTQEFKLIFQMKTKVQKIES 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVD 101
            +IP  GLS      +  I D S H VD
Sbjct: 113 SAIPDNGLS------VSKIEDLSKHTVD 134


>Medtr1g050500.1 | replication factor-A carboxy-terminal domain
           protein | LC | chr1:19683996-19681538 | 20130731
          Length = 543

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 15/166 (9%)

Query: 41  FFNVMPAKGSYRAANHAYRILFSGKTKVVPLECESIPRLGLSLVTPLQLETIADPS---D 97
           FF+V+      +AA + +R++   +T V       +   GL   TPL    +A PS    
Sbjct: 4   FFHVLCDTARLKAAYNDHRMVIHPQTVVRKTYDFLVHGNGL---TPLSSHILARPSLGVG 60

Query: 98  HLVDVVGFLTAVSPVRID--VKGSSHVKIMMMELYDENGSMSFVVLGDCVSVVSDYLSSH 155
           HL+DV+G LTA+S   ++  V+    VKI         G    V+ G  V +  + +++ 
Sbjct: 61  HLIDVIGLLTAISYHNVEDVVRVEICVKIC-------RGRFDCVLYGAYVGLFQEMVNNS 113

Query: 156 SKEKPLVVVQYAKIKKFEGKNLLHTLIPVSTIHLNQEFEEAKAFRK 201
           S   P+VV+Q+AKI +  G   L +   V+ + LN    EA  FR 
Sbjct: 114 SPGLPVVVLQFAKINRETGAFYLESFKDVTRLLLNPHIGEALQFRN 159


>Medtr3g452170.1 | DUF223 domain protein | HC |
           chr3:18995882-18993791 | 20130731
          Length = 453

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/207 (23%), Positives = 86/207 (41%), Gaps = 3/207 (1%)

Query: 13  GKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLE 72
           GKIQA+  K +  K      +G  YEI    V   +  YR   H +++    +TK   ++
Sbjct: 52  GKIQATAKKTLIPKIRSLVQDGEAYEIQNVLVAHNEIRYRCTGHRWKLNMIDQTKFTKID 111

Query: 73  CESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDE 132
           C +IP      V P +    +   D  VDV+G +     ++          ++ + L D 
Sbjct: 112 CNTIPVYHFEFV-PFKEILESTKEDRHVDVIGRVVERDSLKEKEVLGKKSMVLDITLEDS 170

Query: 133 NGSMSFVVLGDCVSVVSD-YLSSHSKEKP-LVVVQYAKIKKFEGKNLLHTLIPVSTIHLN 190
            G+     L D  ++  D YL+ H    P +VV+   K+KK+     +      + + L+
Sbjct: 171 EGNRIHCSLWDTYAIRMDAYLTVHDPNSPVIVVIHLCKLKKYYSTMGISNAFYGTKLILD 230

Query: 191 QEFEEAKAFRKRMNGHSREIEGHVGDI 217
            +    K F  +++G   E+   V  I
Sbjct: 231 DDHPVVKEFLSKIDGADVEVTQGVSQI 257


>Medtr6g013455.1 | DUF223 domain protein | HC | chr6:4270954-4268124
           | 20130731
          Length = 272

 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 42/197 (21%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ + +  K+ ++  EG V+ I  FNV      YR +   Y++ F+  TKV     
Sbjct: 47  QIGASIRRTLIYKFKNQLQEGMVFTISSFNVASNSDLYRPSRKEYKLNFTINTKV----- 101

Query: 74  ESIPRLGLSLVTPLQLETIADPSD---------HLVDVVGFLTAVSPVRIDVKGSSHVKI 124
               +L ++++ P  + +     D         +LVDV+G +  V   R           
Sbjct: 102 ----KLSITVLVPTNVYSFTPAPDVFNEFYDNNYLVDVIGVMIGVGVER----------- 146

Query: 125 MMMELYDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQYAKIKKFEGKNLLHTLIPV 184
                Y+ +         + V  ++ +LSS   +  +V +   K+K F+GK  L      
Sbjct: 147 ----EYERD---------EYVEELNSFLSSGESQNAVVAIMLTKVKLFQGKPALQNAFSS 193

Query: 185 STIHLNQEFEEAKAFRK 201
           + I  N E  E K  RK
Sbjct: 194 TRITFNPEIGETKELRK 210


>Medtr1g105785.1 | replication factor-A carboxy-terminal domain
           protein | HC | chr1:47732917-47735741 | 20130731
          Length = 566

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 90/196 (45%), Gaps = 5/196 (2%)

Query: 13  GKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLE 72
           GKIQAS  K +  +      EG+ Y+I    V      Y+   H +++     TK   ++
Sbjct: 52  GKIQASAKKHLVPRIRSNVEEGSTYDIENVLVTKNDPKYQVTQHRFKLNLIDNTKFFKID 111

Query: 73  CESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVR-IDVKGSSHVKIMMMELYD 131
             +IP      + P      A+  + +VDV+G +     ++  DV G    KIM + L D
Sbjct: 112 AATIPLNHFDFM-PFNEILEAEREEKVVDVIGQVVERDELKERDVNG-RRSKIMDLTLQD 169

Query: 132 -ENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVV-VQYAKIKKFEGKNLLHTLIPVSTIHL 189
            E+  +   +  +    ++ +L++H    P++V +Q  K+KK++G   +      + + L
Sbjct: 170 SESRRVHCTLWANYAERMNSFLAAHDPSSPVIVLIQQCKLKKYQGIMGVSNAFFGTKLLL 229

Query: 190 NQEFEEAKAFRKRMNG 205
             +  EA  F+ +++G
Sbjct: 230 EGDLPEAIEFKSKIDG 245


>Medtr7g096440.1 | PIF1-like helicase | LC | chr7:38691556-38693789
           | 20130731
          Length = 264

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 9/166 (5%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           KIQAS+    F++  D   EG  Y I  F V   K  ++  NH Y++   G T +     
Sbjct: 6   KIQASIKSKDFKQLGDSIEEGASYTIEKFLVQFNKEKFKPTNHKYKLTLIGSTIITKTSY 65

Query: 74  ESIPRLGLSLVTPLQLETIADPSDH--LVDVVGFLTAVSPVR-IDVKGSSHVKIMMMEL- 129
           + IP    +L    + + I   +D+  L+DV+G +  ++ ++ + VKG    KI+ +   
Sbjct: 66  DKIPA---NLFNFTKFQHIIGGTDNGVLMDVIGHVVGMTDIKDVQVKG-KMTKILDLTFE 121

Query: 130 YDENGSMSFVVLGDCVSVVSDYLSSHSKEKPLVVVQY-AKIKKFEG 174
           Y E+ ++   + G     ++ Y+S++     +VVV +  ++  F G
Sbjct: 122 YLESNTIICTLWGHFAEQMNSYMSTNGNTFSIVVVMHLCRLNVFGG 167


>Medtr4g028320.1 | animal RPA1 domain protein | LC |
           chr4:9767872-9767142 | 20130731
          Length = 153

 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ + +  K  ++  EG V+ I  F+V    GSYR + + Y++ F+  TKV   + 
Sbjct: 34  RIGASIRRTLIYKSKEQLQEGMVFTISSFDVASNSGSYRPSRNEYKLNFTINTKVKLSKT 93

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +P    S  +   +   +  ++ LVDV+G +T V   R   +     K+ ++EL D N
Sbjct: 94  VLVPTNVYSFTSAYDVFNESYDNNFLVDVIGVMTGVGVEREYERDGVKTKMNVIEL-DSN 152

Query: 134 G 134
           G
Sbjct: 153 G 153


>Medtr8g036090.1 | animal RPA1 domain protein | HC |
           chr8:13279086-13278300 | 20130731
          Length = 172

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ + +  K+ ++  EG V+ I  FNV    GSYR + + Y++ F+  TKV   + 
Sbjct: 53  RIGASIRRTLIYKFKEQLQEGMVFTISSFNVASNSGSYRPSRNEYKLNFTINTKVKLSKT 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +P    S      +   +  +++LVDV+G +  V   R   +     K+ ++EL D N
Sbjct: 113 VLVPTNVYSFTPAPDVFNESYDNNYLVDVIGVMIGVGVEREYERDGVKTKMNVIEL-DSN 171

Query: 134 G 134
           G
Sbjct: 172 G 172


>Medtr4g471610.1 | animal RPA1 domain protein | HC |
           chr4:27071837-27072623 | 20130731
          Length = 172

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ + +  K+ ++  EG V+ I  FNV    GSYR + + Y++ F+  TKV   + 
Sbjct: 53  RIGASIRRTLIYKFKEQLQEGMVFTISSFNVASNSGSYRPSRNEYKLNFTINTKVKLSKT 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +P    S      +   +  +++LVDV+G +  V   R   +     K+ ++EL D N
Sbjct: 113 VLVPTNVYSFTPAPDVFNESYDNNYLVDVIGVMIGVGVEREYERDGVKTKMNVIEL-DSN 171

Query: 134 G 134
           G
Sbjct: 172 G 172


>Medtr3g078440.1 | animal RPA1 domain protein | HC |
           chr3:35350146-35349360 | 20130731
          Length = 172

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 1/121 (0%)

Query: 14  KIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLEC 73
           +I AS+ + +  K+ ++  EG V+ I  FNV    GSYR + + Y++ F+  TKV   + 
Sbjct: 53  RIGASIRRTLIYKFKEQLQEGMVFTISSFNVASNSGSYRPSRNEYKLNFTINTKVKLSKT 112

Query: 74  ESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELYDEN 133
             +P    S      +   +  +++LVDV+G +  V   R   +     K+ ++EL D N
Sbjct: 113 VLVPTNVYSFTPAPDVFNESYDNNYLVDVIGVMIGVGVEREYERDGVKTKMNVIEL-DSN 171

Query: 134 G 134
           G
Sbjct: 172 G 172


>Medtr4g022520.1 | DUF223 domain protein | HC | chr4:7510297-7517059
           | 20130731
          Length = 206

 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 65/142 (45%), Gaps = 19/142 (13%)

Query: 3   FRPIRDHHQEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILF 62
           FR   ++    +I AS  + +  K  ++  EG V+ I  F+V    GSYR + + Y++ F
Sbjct: 2   FRQKNNYGHGDRIGASTRRTLIYKSKEQLQEGMVFTISSFDVASNSGSYRPSRNEYKLNF 61

Query: 63  SGKTKVVPLECESIPRLGLSLVTPLQLETIADPSD---------HLVDVVGFLTAVSPVR 113
           +  TKV         +L  +++ P  + +    SD          LVDV+G +T V   R
Sbjct: 62  TINTKV---------KLSKTVLVPTNVYSFTPASDVFNESYDNNFLVDVIGVMTGVGVER 112

Query: 114 IDVKGSSHVKIMMMELYDENGS 135
                    K+ ++EL D NG+
Sbjct: 113 EYESDGVKTKMNVIEL-DSNGA 133


>Medtr4g016120.1 | DUF223 domain protein | HC | chr4:4940745-4944777
           | 20130731
          Length = 163

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 1/124 (0%)

Query: 11  QEGKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVP 70
           Q  +I AS+ + +  K+ ++  EG V+ I  FNV    GSYR + + Y++ F+  TKV  
Sbjct: 41  QGDRIGASIRRTLIYKFKNQLQEGMVFTISSFNVASNIGSYRPSRNEYKLNFTINTKVKL 100

Query: 71  LECESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIMMMELY 130
            +   +P    S      +   +  +++LVDV+G +  V   +   +     K+ ++EL 
Sbjct: 101 SKTVLVPTNVYSFTPAPDVFNESYDNNYLVDVIGVMIGVGVEKEYERDGVKTKMNVIEL- 159

Query: 131 DENG 134
           D NG
Sbjct: 160 DSNG 163


>Medtr6g465570.1 | animal RPA1 domain protein | LC |
           chr6:23330063-23328693 | 20130731
          Length = 172

 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 3/126 (2%)

Query: 13  GKIQASLGKAMFRKWADKFVEGNVYEIFFFNVMPAKGSYRAANHAYRILFSGKTKVVPLE 72
           GKI AS+ K +   + D+  EG+ Y I  F V     +Y+   H Y++ F G T V  + 
Sbjct: 48  GKIHASVRKNLIHLFKDQIDEGSAYVIESFMVGSNDHAYKTTGHKYKLNFMGGTNVFRVS 107

Query: 73  CESIPRLGLSLVTPLQLETIADPSDHLVDVVGFLTAVSPVRIDVKGSSHVKIM--MMELY 130
             +IP    + +  +Q+ + A   D L+DV+G +     ++   K     K++  M+E  
Sbjct: 108 SVNIPAHHFTFMPFMQIVS-ATREDKLLDVIGHVVEKDVIKETEKNGKKRKVLDIMLEDL 166

Query: 131 DENGSM 136
           +  GS+
Sbjct: 167 ESYGSI 172