Miyakogusa Predicted Gene
- Lj0g3v0101129.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0101129.1 Non Characterized Hit- tr|I3SCE2|I3SCE2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,66.67,0.0000000000002,seg,NULL,CUFF.5668.1
(165 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g078250.1 | replication factor-A carboxy-terminal domain p... 68 3e-12
Medtr8g062030.1 | replication factor-A carboxy-terminal domain p... 64 6e-11
Medtr0042s0170.1 | replication factor-A carboxy-terminal domain ... 59 3e-09
Medtr1g075850.1 | replication factor-A carboxy-terminal domain p... 57 8e-09
Medtr8g479260.1 | replication factor-A carboxy-terminal domain p... 57 1e-08
Medtr2g008650.1 | replication factor-A carboxy-terminal domain p... 57 1e-08
Medtr4g036240.1 | replication factor-A carboxy-terminal domain p... 51 6e-07
Medtr3g056270.1 | replication factor-A carboxy-terminal domain p... 51 6e-07
Medtr4g036240.2 | replication factor-A carboxy-terminal domain p... 51 6e-07
Medtr4g036240.3 | replication factor-A carboxy-terminal domain p... 50 6e-07
Medtr3g081610.1 | transmembrane protein, putative | LC | chr3:36... 47 7e-06
>Medtr5g078250.1 | replication factor-A carboxy-terminal domain
protein | LC | chr5:33436158-33438920 | 20130731
Length = 517
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 1 MFDSDANYLINKTCKEMLAEAKDPKSRECSPLMEQMLVGRELLFKVEKKSNTVFQFDDSY 60
+FD D L+N C +++ AK + P E+ L G+++LFKVEK +++ FD S+
Sbjct: 354 VFDGDMQNLLNTPCSSLVSVAKAENAGHYPPEFEK-LKGKKMLFKVEKCTSSSIFFDGSF 412
Query: 61 RIKRICDEPSIIEAFKAGGADHTP 84
R+KR+CD+P+II++F G TP
Sbjct: 413 RVKRVCDDPAIIQSFHFVGGQCTP 436
>Medtr8g062030.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:25901653-25904109 | 20130731
Length = 575
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 1 MFDSDANYLINKTCKEMLAEAKDPKSRECSPLMEQMLVGRELLFKVEKKSNTVFQFDDSY 60
+FDSD +YL+ K C ++A++K P + ML G+ LFKV+K + FD SY
Sbjct: 355 LFDSDVHYLLEKQCSVLVAKSKGDDVGFYPPEI-VMLKGKRFLFKVDKPVISGGFFDGSY 413
Query: 61 RIKRICDEPSIIEAFKAGGADHTP 84
R+KR+C + SI+ F G ++TP
Sbjct: 414 RVKRVCADSSIVAKFAMNGYNYTP 437
>Medtr0042s0170.1 | replication factor-A carboxy-terminal domain
protein | LC | scaffold0042:77181-79334 | 20130731
Length = 400
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 1 MFDSDANYLINKTCKEMLAEAKDPKSRECSPLMEQMLVGRELLFKVEKKSNTVFQFDDSY 60
+FD D + L+ K C ++++ AK ++ P L G LLFKVEK S FD SY
Sbjct: 186 VFDGDMHNLLGKQCSDLVSAAK-AENVGFYPDEHLKLKGMYLLFKVEKSSVASVLFDGSY 244
Query: 61 RIKRICDEPSIIEAFKA 77
R++RIC + ++IE+F A
Sbjct: 245 RVRRICSDAAVIESFTA 261
>Medtr1g075850.1 | replication factor-A carboxy-terminal domain
protein | LC | chr1:33615520-33612872 | 20130731
Length = 528
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 37 LVGRELLFKVEKKSNTVFQFDDSYRIKRICDEPSIIEAFKAGGADHTPELATFAAPFT 94
L G+ +LFK+EK + FD S+R+KR+CD+P+II++F G +TP + A F
Sbjct: 353 LKGKRMLFKIEKCTGRSIFFDGSFRVKRVCDDPAIIQSFDTLGGQYTPSKISVAKAFV 410
>Medtr8g479260.1 | replication factor-A carboxy-terminal domain
protein | LC | chr8:33777150-33779789 | 20130731
Length = 555
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 1 MFDSDANYLINKTCKEMLAEAKDPKSRECSPLMEQMLVGRELLFKVEKKSNTVFQFDDSY 60
+FD +A L NK+C +MLAE S P ++G+ LFKVE K + +F+ S+
Sbjct: 358 IFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKVETKVDQNPRFEQSF 417
Query: 61 RIKRICDEPSIIEAFK 76
R+++IC P +I FK
Sbjct: 418 RVRKICAMPDVINEFK 433
>Medtr2g008650.1 | replication factor-A carboxy-terminal domain
protein | LC | chr2:1569207-1566568 | 20130731
Length = 555
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%)
Query: 1 MFDSDANYLINKTCKEMLAEAKDPKSRECSPLMEQMLVGRELLFKVEKKSNTVFQFDDSY 60
+FD +A L NK+C +MLAE S P ++G+ LFKVE K + +F+ S+
Sbjct: 358 IFDKEATALFNKSCVDMLAEHGVAVSEGHLPPEIAGIIGKTFLFKVETKVDQNPRFEQSF 417
Query: 61 RIKRICDEPSIIEAFK 76
R+++IC P +I FK
Sbjct: 418 RVRKICAMPDVINEFK 433
>Medtr4g036240.1 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830642-11833873 | 20130731
Length = 560
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MFDSDANYLINKTCKEMLAEAKDPKSRECSPLMEQMLVGRELLFKVEKKSNTVFQFDDSY 60
+FD DA L NK+C ++L + + P LV LFKVE K+ +F+ S+
Sbjct: 354 LFDRDATMLFNKSCADILETHRADEG--VLPTEIAALVNCTYLFKVEFKTAISPRFEQSF 411
Query: 61 RIKRICDEPSIIEAFKAGGADHTPELATF 89
R+K++C + II FKA A E ATF
Sbjct: 412 RVKKVCTDGVIINQFKAKWAK---EEATF 437
>Medtr3g056270.1 | replication factor-A carboxy-terminal domain
protein | HC | chr3:22409504-22413525 | 20130731
Length = 719
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MFDSDANYLINKTCKEMLAEAKDPKSRECSPLMEQMLVGRELLFKVEKKSNTVFQFDDSY 60
+FD DA L NK+C ++L + + P LV LFKVE K+ +F+ S+
Sbjct: 513 LFDRDATMLFNKSCADILETHRADEG--VLPTEIGALVNCTYLFKVEFKTAISPRFEQSF 570
Query: 61 RIKRICDEPSIIEAFKAGGADHTPELATF 89
R+K++C + II FKA A E ATF
Sbjct: 571 RVKKVCTDGVIINQFKAKWA---KEEATF 596
>Medtr4g036240.2 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830210-11833873 | 20130731
Length = 480
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MFDSDANYLINKTCKEMLAEAKDPKSRECSPLMEQMLVGRELLFKVEKKSNTVFQFDDSY 60
+FD DA L NK+C ++L + + P LV LFKVE K+ +F+ S+
Sbjct: 274 LFDRDATMLFNKSCADILETHRADEG--VLPTEIAALVNCTYLFKVEFKTAISPRFEQSF 331
Query: 61 RIKRICDEPSIIEAFKAGGADHTPELATF 89
R+K++C + II FKA A E ATF
Sbjct: 332 RVKKVCTDGVIINQFKAKWAK---EEATF 357
>Medtr4g036240.3 | replication factor-A carboxy-terminal domain
protein | HC | chr4:11830210-11833873 | 20130731
Length = 417
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 47/89 (52%), Gaps = 5/89 (5%)
Query: 1 MFDSDANYLINKTCKEMLAEAKDPKSRECSPLMEQMLVGRELLFKVEKKSNTVFQFDDSY 60
+FD DA L NK+C ++L + + P LV LFKVE K+ +F+ S+
Sbjct: 211 LFDRDATMLFNKSCADILETHRADEG--VLPTEIAALVNCTYLFKVEFKTAISPRFEQSF 268
Query: 61 RIKRICDEPSIIEAFKAGGADHTPELATF 89
R+K++C + II FKA A E ATF
Sbjct: 269 RVKKVCTDGVIINQFKAKWA---KEEATF 294
>Medtr3g081610.1 | transmembrane protein, putative | LC |
chr3:36944252-36945254 | 20130731
Length = 221
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 31 PLMEQMLVGRELLFKVEKKSNTVFQFDDSYRIKRICDEPSIIEAFK 76
P L GR++LFKVE+ ++ F D S+R+KR+C+E S++E F
Sbjct: 123 PTHFNKLKGRKMLFKVERCTSVSFMSDGSFRVKRVCEEASVLEQFN 168