Miyakogusa Predicted Gene

Lj0g3v0101069.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0101069.1 Non Characterized Hit- tr|I1JYB3|I1JYB3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.24206 PE,90.74,0,no
description,Ribonuclease II/R; seg,NULL; MITOTIC CONTROL PROTEIN
DIS3,NULL; RIBONUCLEASE,NULL; RN,CUFF.5669.1
         (367 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g073170.1 | exosome complex exonuclease RRP44 | HC | chr8:...   666   0.0  
Medtr5g059080.1 | ribonuclease II family protein | HC | chr5:243...   137   1e-32
Medtr5g058810.1 | ribonuclease II family protein | HC | chr5:242...    97   4e-20
Medtr4g021750.2 | ribonuclease II | HC | chr4:7203751-7191578 | ...    71   2e-12
Medtr4g021750.3 | ribonuclease II | HC | chr4:7207197-7191693 | ...    71   2e-12
Medtr4g021750.1 | ribonuclease II | HC | chr4:7207202-7191578 | ...    71   2e-12

>Medtr8g073170.1 | exosome complex exonuclease RRP44 | HC |
           chr8:30968594-30949877 | 20130731
          Length = 934

 Score =  666 bits (1718), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/367 (86%), Positives = 335/367 (91%), Gaps = 1/367 (0%)

Query: 1   MEEVEDLRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEI 60
           ME+VED RPSKRK+IY+EHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEI
Sbjct: 203 MEDVEDHRPSKRKIIYAEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEI 262

Query: 61  IIYGRSNMNRAFDGDIVAVELLPQDQWHEEKSLSIRGXXXXXXXXXVHLAPNSADDAPRT 120
           IIYGRSNMNRAFDGDIVAVELLPQDQW  EKS+SI           VHLAPNSAD APRT
Sbjct: 263 IIYGRSNMNRAFDGDIVAVELLPQDQWQGEKSMSI-ASEEDEDDDDVHLAPNSADVAPRT 321

Query: 121 IPQQGSTGGINAVCNRPSGVVVGIIKRNWHSYCGSLEPMPLPAGSGGVAYALFVSKDRRI 180
           IPQQ STG INA   RPSG +VGIIKRNW SYCGSLEPMP+P GS GVAYALFVSKDRR 
Sbjct: 322 IPQQSSTGEINAGSGRPSGCIVGIIKRNWQSYCGSLEPMPIPGGSRGVAYALFVSKDRRF 381

Query: 181 PKIRLQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGDIGDRDTESEVVLIENDIN 240
           PKIR+QTRQLENLLDKRIIV+VDSWDRQSRYPSGHYVRT+G IGD+DTE+EVVLIENDIN
Sbjct: 382 PKIRIQTRQLENLLDKRIIVSVDSWDRQSRYPSGHYVRTVGKIGDKDTETEVVLIENDIN 441

Query: 241 TRPFSSQVLACLPPLPWSVSSEDFSKPIRQDLRHLRVFSVDPPGCTDIDDALHCYALPNG 300
           +RPFS+QVLACLPPLPWSVSSED S P RQDLRHLRVFSVDPPGC DIDDALHC ALPNG
Sbjct: 442 SRPFSAQVLACLPPLPWSVSSEDLSIPFRQDLRHLRVFSVDPPGCKDIDDALHCIALPNG 501

Query: 301 NFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERL 360
           NF+VGVHIADVTNFV PGTPLDDEASQRGTSVYLVE+RIDMLPKPLTED+CSLRSDVERL
Sbjct: 502 NFDVGVHIADVTNFVFPGTPLDDEASQRGTSVYLVEKRIDMLPKPLTEDVCSLRSDVERL 561

Query: 361 AFSVIWK 367
           AFSVIW+
Sbjct: 562 AFSVIWE 568


>Medtr5g059080.1 | ribonuclease II family protein | HC |
           chr5:24380512-24374112 | 20130731
          Length = 1107

 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 74/190 (38%), Positives = 117/190 (61%), Gaps = 4/190 (2%)

Query: 178 RRIPK-IRLQTRQLENLLDKRIIVA-VDSWDRQSRYPSGHYVRTIGDIGDRDTESEVVLI 235
           R +PK I+++ +  +  ++K ++ A +  W  +S +P G  ++  G   +     + +L 
Sbjct: 417 RDLPKSIKIRLKNGDAAIEKDLVAAQIVDWFEESPFPEGDILQHFGRGSEIQPNLDSILF 476

Query: 236 ENDINTRPFSSQVLACLPPLPWSVSSEDFSKPIRQDLRHLRVFSVDPPGCTDIDDALHCY 295
           +N I    FS++ L+CLP   W +  ++     R DLR+L +FS+DP   TD+DDAL   
Sbjct: 477 KNAICLSEFSAEALSCLPHATWELPLKELQS--RTDLRNLCIFSIDPSTATDLDDALSIE 534

Query: 296 ALPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERRIDMLPKPLTEDICSLRS 355
            LPNGN+ VG+HIADV+ FV P T LD EA  R TSVYL+++++ ML   ++E+I SL  
Sbjct: 535 KLPNGNYRVGIHIADVSYFVLPDTALDVEAQFRSTSVYLLQKKLPMLSALISENIGSLNP 594

Query: 356 DVERLAFSVI 365
            V+RLAFS++
Sbjct: 595 GVDRLAFSML 604



 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 10  SKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRSNMN 69
           S ++  +S H  +  +   L RG   +   RVN +N  EAY   + +  +I+I G    N
Sbjct: 137 SGQRNYFSPHWSVEVVEKALERGDVFKATFRVNAHNRTEAYCSIDGVPTDILIVGAPAQN 196

Query: 70  RAFDGDIVAVELLPQDQWHEEK 91
           RA +GDIVA+++ P   W + K
Sbjct: 197 RAVEGDIVAIKIDPLPLWTKMK 218


>Medtr5g058810.1 | ribonuclease II family protein | HC |
           chr5:24281512-24288073 | 20130731
          Length = 855

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 63/88 (71%)

Query: 278 FSVDPPGCTDIDDALHCYALPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVER 337
           F +DP   TD+DDAL    LPNGN+ VG+HIADV+ FV P T LD EA  R TSVYL+++
Sbjct: 482 FLIDPSTATDLDDALSIEKLPNGNYRVGIHIADVSYFVLPDTALDVEAQFRSTSVYLLQK 541

Query: 338 RIDMLPKPLTEDICSLRSDVERLAFSVI 365
           ++ ML   ++E+I SL   V+RLAFS++
Sbjct: 542 KLPMLSALISENIGSLNPGVDRLAFSML 569



 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 43/82 (52%)

Query: 10  SKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGSESIGDEIIIYGRSNMN 69
           S ++  +S H  +  +   L RG   +   RVN +N  EAY   + +  +I+I G    N
Sbjct: 137 SGQRNYFSPHWSVEVVEKALERGDVFKATFRVNAHNRTEAYCSIDGVPTDILIVGAPAQN 196

Query: 70  RAFDGDIVAVELLPQDQWHEEK 91
           RA +GDIVA+++ P   W + K
Sbjct: 197 RAVEGDIVAIKIDPLPLWTKMK 218


>Medtr4g021750.2 | ribonuclease II | HC | chr4:7203751-7191578 |
           20130731
          Length = 555

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%)

Query: 269 RQDLRHLRVFSVDPPGCTDIDDALHCYALPNGNFEVGVHIADVTNFVHPGTPLDDEASQR 328
           R++L +L+V+++D     ++DDAL    L +G   + +H+AD T +V PG+ +D EA +R
Sbjct: 150 RKNLTNLKVYAIDVDEADELDDALSATKLQDGRINIWIHVADATRYVQPGSIVDREAMRR 209

Query: 329 GTSVYLVERRIDMLPKPLTEDICSLR 354
           GTSV+L      M P+ L     SLR
Sbjct: 210 GTSVFLPTATYSMFPENLAMGAMSLR 235


>Medtr4g021750.3 | ribonuclease II | HC | chr4:7207197-7191693 |
           20130731
          Length = 614

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%)

Query: 269 RQDLRHLRVFSVDPPGCTDIDDALHCYALPNGNFEVGVHIADVTNFVHPGTPLDDEASQR 328
           R++L +L+V+++D     ++DDAL    L +G   + +H+AD T +V PG+ +D EA +R
Sbjct: 209 RKNLTNLKVYAIDVDEADELDDALSATKLQDGRINIWIHVADATRYVQPGSIVDREAMRR 268

Query: 329 GTSVYLVERRIDMLPKPLTEDICSLR 354
           GTSV+L      M P+ L     SLR
Sbjct: 269 GTSVFLPTATYSMFPENLAMGAMSLR 294


>Medtr4g021750.1 | ribonuclease II | HC | chr4:7207202-7191578 |
           20130731
          Length = 787

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 52/86 (60%)

Query: 269 RQDLRHLRVFSVDPPGCTDIDDALHCYALPNGNFEVGVHIADVTNFVHPGTPLDDEASQR 328
           R++L +L+V+++D     ++DDAL    L +G   + +H+AD T +V PG+ +D EA +R
Sbjct: 382 RKNLTNLKVYAIDVDEADELDDALSATKLQDGRINIWIHVADATRYVQPGSIVDREAMRR 441

Query: 329 GTSVYLVERRIDMLPKPLTEDICSLR 354
           GTSV+L      M P+ L     SLR
Sbjct: 442 GTSVFLPTATYSMFPENLAMGAMSLR 467