Miyakogusa Predicted Gene
- Lj0g3v0100959.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0100959.1 tr|A9T0I3|A9T0I3_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_234584,25.61,2e-18,RETICULON-RELATED (PLANT),NULL;
RETICULON,Reticulon; seg,NULL; Reticulon,Reticulon,CUFF.5655.1
(460 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g078740.1 | reticulon-like protein B2 | HC | chr4:30430555... 317 1e-86
Medtr2g090620.1 | reticulon-like protein B2 | HC | chr2:38774000... 298 8e-81
Medtr2g460800.1 | reticulon-like protein B2 | HC | chr2:25088304... 137 2e-32
Medtr2g460800.2 | reticulon-like protein B2 | HC | chr2:25088385... 97 2e-20
>Medtr4g078740.1 | reticulon-like protein B2 | HC |
chr4:30430555-30433018 | 20130731
Length = 313
Score = 317 bits (813), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 157/239 (65%), Positives = 180/239 (75%), Gaps = 1/239 (0%)
Query: 223 EETGGDLDRVGQFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIX 282
EE GGDLDR+G IT+LIMW+DV+KS TKG+NFSIFSA+ QLAI
Sbjct: 48 EENGGDLDRIGMLITELIMWKDVTKSTLWFGFGSLCFLSTCFTKGINFSIFSAISQLAIL 107
Query: 283 XXXXXXXXXXVSQRDQAE-KGYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITL 341
V QR QA+ +GY KLK+DDILRL LILPA N A SKT ELFSGEPS+TL
Sbjct: 108 ILAVSFFSNSVCQRGQAKGRGYVKLKDDDILRLAKLILPALNFAFSKTTELFSGEPSMTL 167
Query: 342 KLAPFLLLGAEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSA 401
K+AP LLLGAEYG LITIWRLSAIGFFV+FSVPKLYSCYS QINQR +CLKLRLLD W+A
Sbjct: 168 KVAPLLLLGAEYGHLITIWRLSAIGFFVNFSVPKLYSCYSAQINQRVECLKLRLLDTWNA 227
Query: 402 CPHKKIVVASALIAFWKLSTIKTRIFTGFILLVIARYCRQNVMQQVEDGEAQLGEKGQK 460
C HKKIVV SAL+ FW LSTI+TRI T F+L+V+ +Y +QNV QQVEDGEAQ +K +
Sbjct: 228 CSHKKIVVVSALVTFWNLSTIRTRICTAFLLIVLLKYFQQNVTQQVEDGEAQAADKEHR 286
>Medtr2g090620.1 | reticulon-like protein B2 | HC |
chr2:38774000-38777144 | 20130731
Length = 394
Score = 298 bits (763), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 167/339 (49%), Positives = 214/339 (63%), Gaps = 21/339 (6%)
Query: 133 RKSKPRFDDELLEAG------SGVRRRCKSRGAQMGLLC--SPXXXXXXXXEEKE--VGL 182
RKSK R D L A +GV+RR K+R Q P E K+ VGL
Sbjct: 36 RKSKTRLIDRLETAADESPEPAGVKRRGKTRLTQNNTRKPRKPRYEVEIQQENKDGAVGL 95
Query: 183 VVDEAGKQRKRRHSGRPRKEKLSLVXXXXXXXXXXXXXXEEETGGDLDRVGQFITDLIMW 242
V +E GK RKR+++ RP+KEK + EEE G LD +GQ ++DL+MW
Sbjct: 96 V-EEVGKPRKRKYNTRPKKEKTNF---------PQPLKFEEENGVGLDHIGQLVSDLVMW 145
Query: 243 RDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXXXVSQ-RDQAEK 301
+DV+KS ++G +FSI SAL QLAI +SQ + EK
Sbjct: 146 KDVTKSTLWFGLGCICLLSSCFSQGFSFSIVSALSQLAILILGVSFFSNSISQSKGVEEK 205
Query: 302 GYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLGAEYGSLITIWR 361
Y K+KEDD+LRL LILPA N AIS+TR LFSGEPS+TLK+ PFLLLGAE+G LITI R
Sbjct: 206 SYVKIKEDDVLRLAKLILPALNFAISRTRVLFSGEPSMTLKVIPFLLLGAEFGHLITIRR 265
Query: 362 LSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACPHKKIVVASALIAFWKLST 421
L GFFVSF++PK+YSCY+ QI++RA+ LKL L D W AC HKK ++ S L+ FW LS+
Sbjct: 266 LCVTGFFVSFTIPKIYSCYTSQIDKRAEGLKLLLFDTWCACTHKKKLMVSVLLTFWNLSS 325
Query: 422 IKTRIFTGFILLVIARYCRQNVMQQVEDGEAQLGEKGQK 460
IKTRIFT F+LLV+ RY +Q+V+QQ++DGEAQ+ EK Q+
Sbjct: 326 IKTRIFTAFMLLVLFRYLKQHVVQQLQDGEAQVDEKEQQ 364
>Medtr2g460800.1 | reticulon-like protein B2 | HC |
chr2:25088304-25093407 | 20130731
Length = 576
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 80/225 (35%), Positives = 114/225 (50%), Gaps = 4/225 (1%)
Query: 234 QFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXXXV 293
Q + DLIMWRDVS+SA K +N S+ SA+ + + +
Sbjct: 326 QSLVDLIMWRDVSRSAFVFGIGTFLIVSSSYAKDINLSLISAMSYVGLVYLAVIFLYRSL 385
Query: 294 SQR---DQAEKGYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLG 350
R D + Y ++E D + + L+LP N +SK + LFSG+P T+KLA L +
Sbjct: 386 ICRGVIDVEDSNYV-VREQDAIWMLKLVLPYLNEFLSKLKALFSGDPGTTMKLAVLLFVL 444
Query: 351 AEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAKCLKLRLLDRWSACPHKKIVVA 410
A GS IT+W+++ IGFF F VPK+ S YS Q+ A R D W +C HKK V
Sbjct: 445 ARCGSFITLWKMAKIGFFGVFIVPKICSSYSAQLTAYANFWVRRFRDAWDSCTHKKAVAL 504
Query: 411 SALIAFWKLSTIKTRIFTGFILLVIARYCRQNVMQQVEDGEAQLG 455
W LS++ RI+ F+L V RY +Q+ M + E E + G
Sbjct: 505 GIFGLVWNLSSVVARIWAVFVLFVAFRYYQQHYMVRDEWVEDETG 549
>Medtr2g460800.2 | reticulon-like protein B2 | HC |
chr2:25088385-25091137 | 20130731
Length = 494
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 82/159 (51%), Gaps = 4/159 (2%)
Query: 234 QFITDLIMWRDVSKSAXXXXXXXXXXXXXXXTKGVNFSIFSALCQLAIXXXXXXXXXXXV 293
Q + DLIMWRDVS+SA K +N S+ SA+ + + +
Sbjct: 326 QSLVDLIMWRDVSRSAFVFGIGTFLIVSSSYAKDINLSLISAMSYVGLVYLAVIFLYRSL 385
Query: 294 SQR---DQAEKGYAKLKEDDILRLTNLILPAFNLAISKTRELFSGEPSITLKLAPFLLLG 350
R D + Y ++E D + + L+LP N +SK + LFSG+P T+KLA L +
Sbjct: 386 ICRGVIDVEDSNYV-VREQDAIWMLKLVLPYLNEFLSKLKALFSGDPGTTMKLAVLLFVL 444
Query: 351 AEYGSLITIWRLSAIGFFVSFSVPKLYSCYSDQINQRAK 389
A GS IT+W+++ IGFF F VPK+ S YS Q+ K
Sbjct: 445 ARCGSFITLWKMAKIGFFGVFIVPKICSSYSAQLTAYGK 483