Miyakogusa Predicted Gene

Lj0g3v0100879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0100879.1 Non Characterized Hit- tr|D8RPU9|D8RPU9_SELML
Putative uncharacterized protein OS=Selaginella
moelle,41.03,7e-19,BSD,BSD; domain in transcription factors and
synapse-,BSD; BSD domain-like,NULL,CUFF.5653.1
         (181 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g020080.1 | BSD domain protein | HC | chr4:6432579-6429647...   230   5e-61
Medtr4g020080.2 | BSD domain protein | HC | chr4:6432579-6429855...   164   4e-41
Medtr4g110020.1 | BSD domain protein | HC | chr4:45789702-457956...   119   1e-27
Medtr5g048180.1 | BSD domain protein | HC | chr5:21092676-210979...   109   2e-24
Medtr5g048180.3 | BSD domain protein | HC | chr5:21092681-210964...   108   2e-24
Medtr5g048180.2 | BSD domain protein | HC | chr5:21092681-210979...   108   4e-24
Medtr3g103310.1 | BSD domain protein | HC | chr3:47650656-476551...    52   4e-07

>Medtr4g020080.1 | BSD domain protein | HC | chr4:6432579-6429647 |
           20130731
          Length = 170

 Score =  230 bits (587), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 122/180 (67%), Positives = 142/180 (78%), Gaps = 11/180 (6%)

Query: 2   MEWLRRSLSRSPRNGETSKTQTQSNTKEQDQQQQQHMFGITEELINLVKSFTIDTFKNFP 61
           M WL+R+LS+S RN          NT  Q Q +Q+H  GIT+ELINLVKSFTIDTFKNFP
Sbjct: 1   MYWLKRTLSKSSRN---------PNTATQQQHEQEH-HGITDELINLVKSFTIDTFKNFP 50

Query: 62  LQDEDQATYGEEAQSTTSTKVRKDLSQWQERHAVLVLSSVKELSQLRFVLCPRHLKENEF 121
           LQDE   +   E   +TST+VRKDLSQWQERHAVL+LS+VKE+SQLR+VLCPRHLKEN+F
Sbjct: 51  LQDE-DESSYSEEVESTSTRVRKDLSQWQERHAVLILSNVKEISQLRYVLCPRHLKENQF 109

Query: 122 WRIYFILTRSHIAEYELRAIQQEKLKRMATEDEKSSNNSLYEIEMAEAKHGSIIEPLPPS 181
           W IYF L RSH+A YELRAIQQEKLK+MA ED+KSS+   +EIEMAEAK G+  EPLPPS
Sbjct: 110 WIIYFTLARSHLAPYELRAIQQEKLKQMAMEDDKSSDKHPHEIEMAEAKPGNFTEPLPPS 169


>Medtr4g020080.2 | BSD domain protein | HC | chr4:6432579-6429855 |
           20130731
          Length = 125

 Score =  164 bits (415), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/133 (66%), Positives = 106/133 (79%), Gaps = 11/133 (8%)

Query: 2   MEWLRRSLSRSPRNGETSKTQTQSNTKEQDQQQQQHMFGITEELINLVKSFTIDTFKNFP 61
           M WL+R+LS+S RN          NT  Q Q +Q+H  GIT+ELINLVKSFTIDTFKNFP
Sbjct: 1   MYWLKRTLSKSSRN---------PNTATQQQHEQEH-HGITDELINLVKSFTIDTFKNFP 50

Query: 62  LQDEDQATYGEEAQSTTSTKVRKDLSQWQERHAVLVLSSVKELSQLRFVLCPRHLKENEF 121
           LQDED+++   E   +TST+VRKDLSQWQERHAVL+LS+VKE+SQLR+VLCPRHLKEN+F
Sbjct: 51  LQDEDESS-YSEEVESTSTRVRKDLSQWQERHAVLILSNVKEISQLRYVLCPRHLKENQF 109

Query: 122 WRIYFILTRSHIA 134
           W IYF L RSH+A
Sbjct: 110 WIIYFTLARSHLA 122


>Medtr4g110020.1 | BSD domain protein | HC | chr4:45789702-45795625
           | 20130731
          Length = 228

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 5/109 (4%)

Query: 39  FGITEELINLVKSFTIDTFKNFPLQDEDQATYGEEAQSTTSTKVRKDLSQWQERHAVLVL 98
           FGIT+EL + VK  T+ TF++FPLQD D   +   A S     +R+DL++WQE+HA LVL
Sbjct: 65  FGITDELRDFVKGITVTTFRDFPLQD-DTELFDVPAVSN----IRQDLTEWQEKHANLVL 119

Query: 99  SSVKELSQLRFVLCPRHLKENEFWRIYFILTRSHIAEYELRAIQQEKLK 147
           S+VKE+S+LR+ LCP  +KE +FWRIYFIL  +HIA YE   +Q  KLK
Sbjct: 120 STVKEISKLRYELCPHVMKERKFWRIYFILVNNHIAPYENWYMQDAKLK 168


>Medtr5g048180.1 | BSD domain protein | HC | chr5:21092676-21097933
           | 20130731
          Length = 296

 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 81/117 (69%), Gaps = 3/117 (2%)

Query: 39  FGITEELINLVKSFTIDTFKNFPLQDEDQATYGEEAQSTTSTKVRKDLSQWQERHAVLVL 98
           FGIT++L + V+  T  TFK+FP+  ++  + G +     ++ VRKDL+++QE+HA LVL
Sbjct: 102 FGITDDLRSFVQGLTSTTFKHFPVNSDESESEGSD---VATSNVRKDLNEFQEKHATLVL 158

Query: 99  SSVKELSQLRFVLCPRHLKENEFWRIYFILTRSHIAEYELRAIQQEKLKRMATEDEK 155
           ++VKE+S+LR+ LCPR +KE  FW+IYF L  +H+A +E + +++ +     +ED K
Sbjct: 159 TTVKEISRLRYELCPRAMKERHFWKIYFTLVNTHVAPFEKQYMEELREAAKKSEDAK 215


>Medtr5g048180.3 | BSD domain protein | HC | chr5:21092681-21096453
           | 20130731
          Length = 286

 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 81/117 (69%), Gaps = 3/117 (2%)

Query: 39  FGITEELINLVKSFTIDTFKNFPLQDEDQATYGEEAQSTTSTKVRKDLSQWQERHAVLVL 98
           FGIT++L + V+  T  TFK+FP+  ++  + G +     ++ VRKDL+++QE+HA LVL
Sbjct: 102 FGITDDLRSFVQGLTSTTFKHFPVNSDESESEGSD---VATSNVRKDLNEFQEKHATLVL 158

Query: 99  SSVKELSQLRFVLCPRHLKENEFWRIYFILTRSHIAEYELRAIQQEKLKRMATEDEK 155
           ++VKE+S+LR+ LCPR +KE  FW+IYF L  +H+A +E + +++ +     +ED K
Sbjct: 159 TTVKEISRLRYELCPRAMKERHFWKIYFTLVNTHVAPFEKQYMEELREAAKKSEDAK 215


>Medtr5g048180.2 | BSD domain protein | HC | chr5:21092681-21097913
           | 20130731
          Length = 302

 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 81/117 (69%), Gaps = 3/117 (2%)

Query: 39  FGITEELINLVKSFTIDTFKNFPLQDEDQATYGEEAQSTTSTKVRKDLSQWQERHAVLVL 98
           FGIT++L + V+  T  TFK+FP+  ++  + G +     ++ VRKDL+++QE+HA LVL
Sbjct: 102 FGITDDLRSFVQGLTSTTFKHFPVNSDESESEGSD---VATSNVRKDLNEFQEKHATLVL 158

Query: 99  SSVKELSQLRFVLCPRHLKENEFWRIYFILTRSHIAEYELRAIQQEKLKRMATEDEK 155
           ++VKE+S+LR+ LCPR +KE  FW+IYF L  +H+A +E + +++ +     +ED K
Sbjct: 159 TTVKEISRLRYELCPRAMKERHFWKIYFTLVNTHVAPFEKQYMEELREAAKKSEDAK 215


>Medtr3g103310.1 | BSD domain protein | HC | chr3:47650656-47655164
           | 20130731
          Length = 418

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 15/100 (15%)

Query: 36  QHMFGITEELINLVKSFTI--DTFKNFPLQDEDQATYGEEAQSTTSTKVRKDLSQWQERH 93
           Q   GITEE++    +  +  +T+ +FP+                      ++S+ Q  H
Sbjct: 150 QCAVGITEEVLTFAMNIAMHPETWLDFPID-------------EEDDNDDFEMSEDQRDH 196

Query: 94  AVLVLSSVKELSQLRFVLCPRHLKENEFWRIYFILTRSHI 133
           A++V      L+ LR  LCP H+ E+ FW++YF+L  S +
Sbjct: 197 AMVVERLAPRLAALRIELCPCHMSESYFWKVYFVLLHSRL 236