Miyakogusa Predicted Gene

Lj0g3v0099779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0099779.1 tr|Q42867|Q42867_LUPAL TRNA
nucleotidyltransferase OS=Lupinus albus GN=CCA1 PE=2
SV=1,68.18,1e-17,TRNA NUCLEOTIDYLTRANSFERASE,NULL;
TRNA-NUCLEOTIDYLTRANSFERASE/POLY(A) POLYMERASE FAMILY
MEMBER,NULL;,CUFF.5600.1
         (138 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g096870.1 | tRNA nucleotidyltransferase | HC | chr1:436507...    92   2e-19
Medtr1g096810.1 | tRNA nucleotidyltransferase | HC | chr1:436195...    83   8e-17

>Medtr1g096870.1 | tRNA nucleotidyltransferase | HC |
           chr1:43650768-43643846 | 20130731
          Length = 565

 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 3/75 (4%)

Query: 22  LRSSAPSILGPGILQSRAHQSKHLETARMCLFGVWIHFVDLRREEYTDNSCIPSEQTFRT 81
           ++  APS+    +++S   QSKHLETARM L  +WI FV+LR EEY +NS IPS+QTF T
Sbjct: 135 IKEDAPSVC---VIESNPDQSKHLETARMRLSDMWIDFVNLRSEEYAENSRIPSKQTFGT 191

Query: 82  PEEDVYRRDLTINSL 96
            E+D YRRDLTINSL
Sbjct: 192 AEQDAYRRDLTINSL 206



 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 31/38 (81%)

Query: 96  LGVSYLDTAWNLIQLIGASTFTARERRKSLYAALFLPL 133
           L +SYLD A NLI L+G STFTA +RR SLYAALFLPL
Sbjct: 335 LCISYLDNASNLIHLLGESTFTAEQRRLSLYAALFLPL 372


>Medtr1g096810.1 | tRNA nucleotidyltransferase | HC |
           chr1:43619585-43613134 | 20130731
          Length = 550

 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 53/75 (70%), Gaps = 4/75 (5%)

Query: 22  LRSSAPSILGPGILQSRAHQSKHLETARMCLFGVWIHFVDLRREEYTDNSCIPSEQTFRT 81
           L+  APS+    +++S A +SKHLETA M LFG+ I FV+LR E+Y     IP EQTF T
Sbjct: 80  LKEDAPSVC---VIESDAEKSKHLETATMRLFGISIDFVNLRSEKYKKECNIP-EQTFGT 135

Query: 82  PEEDVYRRDLTINSL 96
            EED YRRDLTINSL
Sbjct: 136 AEEDAYRRDLTINSL 150



 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/58 (50%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 76  EQTFRTPEEDVYRRDLTINSLGVSYLDTAWNLIQLIGASTFTARERRKSLYAALFLPL 133
           +  F  PE ++   D     L +SYLD A  LI L+G STFT  +RR +LYAALFLPL
Sbjct: 298 QTVFTLPEHELVISD-ECERLCISYLDNASKLIHLLGESTFTVEQRRLALYAALFLPL 354