Miyakogusa Predicted Gene

Lj0g3v0099219.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0099219.1 tr|K0KTJ7|K0KTJ7_9ASCO Transcription initiation
factor TFIID subunit 5 OS=Wickerhamomyces ciferrii
G,39.83,1e-16,LISH,LisH dimerisation motif; TFIID_90kDa,TFIID subunit,
WD40-associated region; SUBFAMILY NOT NAMED,CUFF.5613.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g106080.1 | TBP-associated factor 5 | HC | chr3:48932864-4...   231   9e-62

>Medtr3g106080.1 | TBP-associated factor 5 | HC |
           chr3:48932864-48942802 | 20130731
          Length = 669

 Score =  231 bits (590), Expect = 9e-62,   Method: Composition-based stats.
 Identities = 106/127 (83%), Positives = 115/127 (90%), Gaps = 3/127 (2%)

Query: 1   MDEDEIVGYVTAYLKKKGFTQTEKVFQEEFQHNKNTTTT---VEPDIANHLQALSQLETG 57
           MDEDEI+GYVTAYLKKKGF QTEKVFQEEFQ NK ++++   +EPDIANHL A SQLE G
Sbjct: 1   MDEDEILGYVTAYLKKKGFKQTEKVFQEEFQQNKTSSSSNSILEPDIANHLHAFSQLENG 60

Query: 58  PARFHDGYSGLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNAFRED 117
           PAR+H+GYS LRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFF  FRED
Sbjct: 61  PARYHNGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHIQEARNFFTTFRED 120

Query: 118 HEMMHLR 124
           HE+MHLR
Sbjct: 121 HELMHLR 127