Miyakogusa Predicted Gene

Lj0g3v0098889.1
Show Alignment: 
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0098889.1 Non Characterized Hit- tr|I3S6S9|I3S6S9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,87.05,0,seg,NULL;
Methyltransf_8,Methyltransferase-related; SUBFAMILY NOT NAMED,NULL;
UNCHARACTERIZED,Methyl,CUFF.5562.1
         (259 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g033530.1 | ribosomal RNA-processing-like protein | HC | c...   228   5e-60
Medtr2g062880.1 | ribosomal RNA-processing-like protein | HC | c...   221   4e-58
Medtr2g062880.2 | ribosomal RNA-processing-like protein | HC | c...   221   4e-58
Medtr2g062880.3 | ribosomal RNA-processing-like protein | HC | c...   168   4e-42

>Medtr7g033530.1 | ribosomal RNA-processing-like protein | HC |
           chr7:12137758-12130937 | 20130731
          Length = 254

 Score =  228 bits (581), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 110/140 (78%), Positives = 119/140 (85%), Gaps = 3/140 (2%)

Query: 52  FLEKMRARLSGGHFRMLNEKLYTCTGKEALDYFQEDPSLFNLYHAGYQTQMSNWPEQPVN 111
           FLEKMRARLSGGHFRM+NEKLYTCTGKEALDYF+ED SLFNLYHAGY+TQMSNWPEQPVN
Sbjct: 32  FLEKMRARLSGGHFRMINEKLYTCTGKEALDYFREDSSLFNLYHAGYKTQMSNWPEQPVN 91

Query: 112 VIIKWLRKQNPSFVVADFGCGEALIANSVKNTVFSLDLVSNDPKVIACDMANVCPSTCKA 171
           VIIKWL+KQ+PSFVVADFGCGEALIA SVKNTVFSLDLVSNDP VIACDMAN    +  A
Sbjct: 92  VIIKWLKKQSPSFVVADFGCGEALIAKSVKNTVFSLDLVSNDPDVIACDMANTPLDSASA 151

Query: 172 IVLCKCWKVTSVALDNHSSY 191
            V   C    S+   N+ +Y
Sbjct: 152 DVAVFC---LSLMGTNYQTY 168


>Medtr2g062880.1 | ribosomal RNA-processing-like protein | HC |
           chr2:26600832-26594189 | 20130731
          Length = 253

 Score =  221 bits (564), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 106/140 (75%), Positives = 118/140 (84%), Gaps = 3/140 (2%)

Query: 52  FLEKMRARLSGGHFRMLNEKLYTCTGKEALDYFQEDPSLFNLYHAGYQTQMSNWPEQPVN 111
           FLEKMRARLSGGHFRM+NEKLYTCTGKEAL+YF+ED SLFNLYHAGY+TQMSNWPEQPVN
Sbjct: 30  FLEKMRARLSGGHFRMINEKLYTCTGKEALNYFREDSSLFNLYHAGYKTQMSNWPEQPVN 89

Query: 112 VIIKWLRKQNPSFVVADFGCGEALIANSVKNTVFSLDLVSNDPKVIACDMANVCPSTCKA 171
           VIIKWL+KQ+PSF+VADFGCGEA IA SVKNTVFSLDLVS+DP VIACDMAN    +  A
Sbjct: 90  VIIKWLKKQSPSFIVADFGCGEARIAKSVKNTVFSLDLVSSDPDVIACDMANTPLGSASA 149

Query: 172 IVLCKCWKVTSVALDNHSSY 191
            V   C    S+   N+ +Y
Sbjct: 150 DVAVFC---LSLMGTNYQTY 166


>Medtr2g062880.2 | ribosomal RNA-processing-like protein | HC |
           chr2:26600740-26593763 | 20130731
          Length = 253

 Score =  221 bits (564), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 106/140 (75%), Positives = 118/140 (84%), Gaps = 3/140 (2%)

Query: 52  FLEKMRARLSGGHFRMLNEKLYTCTGKEALDYFQEDPSLFNLYHAGYQTQMSNWPEQPVN 111
           FLEKMRARLSGGHFRM+NEKLYTCTGKEAL+YF+ED SLFNLYHAGY+TQMSNWPEQPVN
Sbjct: 30  FLEKMRARLSGGHFRMINEKLYTCTGKEALNYFREDSSLFNLYHAGYKTQMSNWPEQPVN 89

Query: 112 VIIKWLRKQNPSFVVADFGCGEALIANSVKNTVFSLDLVSNDPKVIACDMANVCPSTCKA 171
           VIIKWL+KQ+PSF+VADFGCGEA IA SVKNTVFSLDLVS+DP VIACDMAN    +  A
Sbjct: 90  VIIKWLKKQSPSFIVADFGCGEARIAKSVKNTVFSLDLVSSDPDVIACDMANTPLGSASA 149

Query: 172 IVLCKCWKVTSVALDNHSSY 191
            V   C    S+   N+ +Y
Sbjct: 150 DVAVFC---LSLMGTNYQTY 166


>Medtr2g062880.3 | ribosomal RNA-processing-like protein | HC |
           chr2:26598656-26593763 | 20130731
          Length = 212

 Score =  168 bits (426), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 82/115 (71%), Positives = 93/115 (80%), Gaps = 3/115 (2%)

Query: 77  GKEALDYFQEDPSLFNLYHAGYQTQMSNWPEQPVNVIIKWLRKQNPSFVVADFGCGEALI 136
           GKEAL+YF+ED SLFNLYHAGY+TQMSNWPEQPVNVIIKWL+KQ+PSF+VADFGCGEA I
Sbjct: 14  GKEALNYFREDSSLFNLYHAGYKTQMSNWPEQPVNVIIKWLKKQSPSFIVADFGCGEARI 73

Query: 137 ANSVKNTVFSLDLVSNDPKVIACDMANVCPSTCKAIVLCKCWKVTSVALDNHSSY 191
           A SVKNTVFSLDLVS+DP VIACDMAN    +  A V   C    S+   N+ +Y
Sbjct: 74  AKSVKNTVFSLDLVSSDPDVIACDMANTPLGSASADVAVFC---LSLMGTNYQTY 125