Miyakogusa Predicted Gene

Lj0g3v0098479.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0098479.1 Non Characterized Hit- tr|I1JDV6|I1JDV6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,31.53,2e-18,VWFA,von
Willebrand factor, type A; OS09G0306700 PROTEIN,NULL; PROSTATE TUMOR
OVEREXPRESSED GENE 1 (,CUFF.5514.1
         (193 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g085080.1 | mediator complex subunit 25 von willebrand fac...   224   5e-59
Medtr6g085100.1 | mediator complex subunit 25 von willebrand fac...   220   6e-58
Medtr6g085130.1 | hypothetical protein | LC | chr6:32102407-3209...   103   1e-22
Medtr5g054680.1 | phytochrome and flowering time regulatory prot...   100   7e-22
Medtr1g013000.1 | mediator of RNA polymerase II transcription su...    99   2e-21

>Medtr6g085080.1 | mediator complex subunit 25 von willebrand factor
           type A protein | LC | chr6:32077390-32069017 | 20130731
          Length = 713

 Score =  224 bits (570), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 112/194 (57%), Positives = 140/194 (72%), Gaps = 4/194 (2%)

Query: 1   MVTKKWLSIVVDGNAALRPHWPHIVSEYLEKIVRRFLINCDEEGAYLGLLHYNTN---FD 57
           M  K+WL+IVVDGN AL  +W  I+S YLEKIVR F+    E+ +YLGL+ YN N    +
Sbjct: 1   MENKRWLNIVVDGNKALEKYWTDILSNYLEKIVRCFVGESQEQESYLGLVLYNANSELVE 60

Query: 58  AGYTVRFVEWTKDVNRFLQALSSLSFNGNSQDQYTMADGLAEALMMFLKPFNYIMTKEEY 117
           AGY ++F+ WTKDVN+F++ LS LSFNGN  +Q TMA+GLAEAL+M+ KP +  MT+ EY
Sbjct: 61  AGYDMQFINWTKDVNKFMENLSHLSFNGNDANQSTMAEGLAEALVMYPKPCD-TMTEREY 119

Query: 118 NSAERHCLLVTAGDPIPRRMLVSMPSIREGQVVGPHEKDCMADFLEVAKMFVQLSVSLSV 177
             +ERHC+LV  GDP P+ MLV +P I+  QV+G   K C ADFLEVAK  + LSVSLSV
Sbjct: 120 YISERHCILVAPGDPAPKSMLVCLPMIQRAQVIGQRLKACQADFLEVAKTCIPLSVSLSV 179

Query: 178 ITPNESLIFRAIFN 191
           ITPN   IF AIFN
Sbjct: 180 ITPNPVPIFGAIFN 193


>Medtr6g085100.1 | mediator complex subunit 25 von willebrand factor
           type A protein | LC | chr6:32089756-32081059 | 20130731
          Length = 752

 Score =  220 bits (561), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 139/194 (71%), Gaps = 4/194 (2%)

Query: 1   MVTKKWLSIVVDGNAALRPHWPHIVSEYLEKIVRRFLINCDEEGAYLGLLHYNTN---FD 57
           M  K+WL+IVVDGN AL  +W  I+S YLEKIVR F+    E+ +YLGL+ YN N    +
Sbjct: 1   MENKRWLNIVVDGNKALEQYWHDILSNYLEKIVRCFVGESQEQESYLGLVLYNANSELVE 60

Query: 58  AGYTVRFVEWTKDVNRFLQALSSLSFNGNSQDQYTMADGLAEALMMFLKPFNYIMTKEEY 117
           AGY ++F+ WTKDV +F++ LS LSFNGN  +Q TMA+GLAEAL+M+ KP +  MT+ EY
Sbjct: 61  AGYDMQFINWTKDVTKFMENLSHLSFNGNDANQSTMAEGLAEALVMYPKPCD-TMTEREY 119

Query: 118 NSAERHCLLVTAGDPIPRRMLVSMPSIREGQVVGPHEKDCMADFLEVAKMFVQLSVSLSV 177
             +ERHC+LV  GDP P+ MLV +P I+  QV+G   K C ADFLEVAK  + LSVSLSV
Sbjct: 120 YISERHCILVAPGDPAPKSMLVCLPMIQRAQVIGQRLKACQADFLEVAKTCIPLSVSLSV 179

Query: 178 ITPNESLIFRAIFN 191
           ITPN   IF AIFN
Sbjct: 180 ITPNPVPIFGAIFN 193


>Medtr6g085130.1 | hypothetical protein | LC |
           chr6:32102407-32098176 | 20130731
          Length = 624

 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 1/89 (1%)

Query: 103 MFLKPFNYIMTKEEYNSAERHCLLVTAGDPIPRRMLVSMPSIREGQVVGPHEKDCMADFL 162
           M+ KP +  MT+ EY ++ERHC+LV  GDP P+ MLV +P I+  QV+G   K C ADFL
Sbjct: 1   MYPKPCD-TMTEREYYNSERHCILVAPGDPAPKSMLVCLPMIQRAQVIGQRLKACQADFL 59

Query: 163 EVAKMFVQLSVSLSVITPNESLIFRAIFN 191
           EVAK  V L+VS+SVITPN   IF AIFN
Sbjct: 60  EVAKTCVPLAVSMSVITPNPVPIFGAIFN 88


>Medtr5g054680.1 | phytochrome and flowering time regulatory protein
           | HC | chr5:22512525-22526575 | 20130731
          Length = 820

 Score =  100 bits (250), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 66/200 (33%), Positives = 106/200 (53%), Gaps = 11/200 (5%)

Query: 2   VTKKWLSIVVDGNAALRPHWPHIVSEYLEKIVRRFLINCDE------EGAYLGLLHYNTN 55
           + +K L + V+  AA+ P+W  ++ +YLEKIVR    N               L+ YNT+
Sbjct: 1   MAEKQLIVAVETTAAMGPYWDTLLMDYLEKIVRCLGGNESTGQKPSGSNVEFSLVTYNTH 60

Query: 56  -FDAGYTVRFVEWTKDVNRFLQALSSLSFNGNSQDQYTMADGLAEALMMFLKPFNYIMTK 114
              +G  V+   WT+D + FLQ L S+ F+G   +   +A+GLAEALMMF  P       
Sbjct: 61  GCYSGILVQRTGWTRDPDVFLQWLESIPFSGGGFNDAAIAEGLAEALMMF-PPSQSGGLN 119

Query: 115 EEYNSAERHCLLVTAGDPIPRRMLVSMP---SIREGQVVGPHEKDCMADFLEVAKMFVQL 171
           ++      HC+LV A +P P +  V +P   S+ + + +  ++ + + D   VAK F Q 
Sbjct: 120 QQNVDTNMHCILVAASNPYPLQTPVYVPQLQSLEKTESIDSNQVNQLYDAEAVAKAFPQF 179

Query: 172 SVSLSVITPNESLIFRAIFN 191
           ++SLSV+ P +    +AI+N
Sbjct: 180 NISLSVVCPKQLPKIKAIYN 199


>Medtr1g013000.1 | mediator of RNA polymerase II transcription
           subunit 25 | LC | chr1:2786873-2785071 | 20130731
          Length = 600

 Score = 99.4 bits (246), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/196 (34%), Positives = 102/196 (52%), Gaps = 12/196 (6%)

Query: 1   MVTKKWLSIVVDGNAALRPHWPHIVSEYLEKIVRRFLINCDEE----GAYLGLLHYNTN- 55
           M  KK + +VV+  AA+ PHW  +  +YL KIV+     C  E     A   L+ Y+T+ 
Sbjct: 1   MAEKKVI-VVVESTAAMGPHWDTLQVDYLNKIVKSL---CGNEPAVSNAQFALVTYHTHG 56

Query: 56  FDAGYTVRFVEWTKDVNRFLQALSSLSFNGNSQDQYTMADGLAEALMMFLKPFNYIMTKE 115
             +   V+   WT+D   FL  LSS+SF+G   +   +A+GLAEALMMF  P       +
Sbjct: 57  IYSPVLVQRSGWTRDPEVFLDWLSSISFSGGGLNDTAVAEGLAEALMMF-SPSQSESPNQ 115

Query: 116 EYNSAERHCLLVTAGDPIPRRMLVSMPSIREGQVVGPHEKDCMADFLEVAKMFVQLSVSL 175
           +      HC+LV A +P P +  + +P  ++ + +     +   D  +VAK F Q S+SL
Sbjct: 116 KNVDMPMHCILVAASNPYPLKRPIYVP--KKNESIDSESGNQFYDAEDVAKAFPQFSISL 173

Query: 176 SVITPNESLIFRAIFN 191
           SVI P      +AI+N
Sbjct: 174 SVICPRNLPKIKAIYN 189