Miyakogusa Predicted Gene

Lj0g3v0098349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0098349.1 Non Characterized Hit- tr|I1JKE3|I1JKE3_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.31934
PE,90.53,0,RPN7,26S proteasome, regulatory subunit Rpn7;
PCI,Proteasome component (PCI) domain; no description,,CUFF.5498.1
         (412 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g432630.1 | COP9 signalosome complex subunit 1 | HC | chr8...   753   0.0  
Medtr7g076160.1 | COP9 signalosome complex subunit 1 | HC | chr7...   628   e-180
Medtr6g025300.1 | 26S proteasome subunit RPN7 | LC | chr6:868570...   232   5e-61
Medtr4g104080.1 | 26S proteasome non-ATPase regulatory subunit 6...    91   2e-18
Medtr8g464820.1 | glyceraldehyde-3-phosphate dehydrogenase | LC ...    54   2e-07
Medtr8g046560.1 | 26S proteasome non-ATPase regulatory subunit 6...    50   6e-06

>Medtr8g432630.1 | COP9 signalosome complex subunit 1 | HC |
           chr8:12373860-12369630 | 20130731
          Length = 445

 Score =  753 bits (1943), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/412 (87%), Positives = 383/412 (92%)

Query: 1   MSGDQLDIEAYAGLYSGRTKIMRLLFIADANKNPTVQLEALRMAYDEIKKGENTHLFREV 60
           MSGDQLDIEAY+ LYSGRTKIMRLLFIA+ +KN TVQL+ALR+AY EIKKGENT LFREV
Sbjct: 34  MSGDQLDIEAYSSLYSGRTKIMRLLFIANKSKNATVQLDALRLAYHEIKKGENTQLFREV 93

Query: 61  VKKIDGKLGPNYNMDSAWCDAFDRRAEQKREKLENELNAYRTNLIKESIRMGYNDLGDFY 120
           V KIDG+LG  Y MD  WCD  +R+ EQK+E+LENELNAYRTNLIKESIRMGYND GDFY
Sbjct: 94  VAKIDGRLGEGYEMDLGWCDGVERKMEQKKERLENELNAYRTNLIKESIRMGYNDFGDFY 153

Query: 121 YAHGQLGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFSHVSSYVSKAEQTPEGL 180
           Y+HG LGDAFKSYVRTRDYCTTSKHIIHMC+S ILVSIEMGQFSHVSSYV+KAEQ  + L
Sbjct: 154 YSHGLLGDAFKSYVRTRDYCTTSKHIIHMCLSTILVSIEMGQFSHVSSYVNKAEQATDAL 213

Query: 181 DPITVSKLRCAAGLANLEAKKYKLAARKFLETGPELVNHYNEVIAPQDVATYGGLCALAT 240
           DPI  SKLRCAAGLANLEAKKYKLAARKFLE GPEL + YNEVIA QDVATYGGLCALAT
Sbjct: 214 DPIITSKLRCAAGLANLEAKKYKLAARKFLEAGPELGSTYNEVIAAQDVATYGGLCALAT 273

Query: 241 FDRAELKAKVIDNSNFRNFLELVPEVRELVNDFYSSHYASCLEYLGNLKANLLLDIHLHD 300
           FDRAELK+KVIDNSNFRNFLELVPEVREL+NDFYSSHYASCLEYLGNLK+NL LDIHLHD
Sbjct: 274 FDRAELKSKVIDNSNFRNFLELVPEVRELINDFYSSHYASCLEYLGNLKSNLSLDIHLHD 333

Query: 301 HVETLYDQIRHKALIQYTLPFVSVDLNMMADAFKTTVVGLQKELEALITDNQIQARIDSH 360
           HVETLYDQIRHKALIQYTLPFVSVDLNMMA+AFKTTVVG++KELEALITDNQIQARIDSH
Sbjct: 334 HVETLYDQIRHKALIQYTLPFVSVDLNMMANAFKTTVVGIEKELEALITDNQIQARIDSH 393

Query: 361 NKILYARHADQRNATFQRVLDTGREFDRDVRSMLLRANLIKHDHNLRALRKL 412
           NKILYARHADQRNATFQRVL+TGREFDRDVRSMLLR+NLIKHD N+RA RKL
Sbjct: 394 NKILYARHADQRNATFQRVLETGREFDRDVRSMLLRSNLIKHDFNIRASRKL 445


>Medtr7g076160.1 | COP9 signalosome complex subunit 1 | HC |
           chr7:28636048-28630667 | 20130731
          Length = 443

 Score =  628 bits (1620), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 307/412 (74%), Positives = 359/412 (87%), Gaps = 1/412 (0%)

Query: 2   SGDQLDIEAYAGLYSGRTKIMRLLFIAD-ANKNPTVQLEALRMAYDEIKKGENTHLFREV 60
           + DQLDIEAY  LYSGRT+I RLLFIAD    N T+QLEALR+A+DEIKKGE+T L RE+
Sbjct: 32  ASDQLDIEAYISLYSGRTRISRLLFIADHCGGNNTMQLEALRLAFDEIKKGEDTFLMREI 91

Query: 61  VKKIDGKLGPNYNMDSAWCDAFDRRAEQKREKLENELNAYRTNLIKESIRMGYNDLGDFY 120
           VKKI+G+LG  Y +D AWCDA +++AE K+EKL++ELN+YRTNLIKESIRMGYND GDFY
Sbjct: 92  VKKINGRLGSGYALDEAWCDAIEKKAELKKEKLDSELNSYRTNLIKESIRMGYNDFGDFY 151

Query: 121 YAHGQLGDAFKSYVRTRDYCTTSKHIIHMCMSAILVSIEMGQFSHVSSYVSKAEQTPEGL 180
           YAHGQLG+AFK+Y+RTRDYCTTSKH IHM ++AILVSIEMGQ+ H+S++VSKAE   + L
Sbjct: 152 YAHGQLGEAFKNYIRTRDYCTTSKHAIHMSLNAILVSIEMGQYPHISTHVSKAEAVLDPL 211

Query: 181 DPITVSKLRCAAGLANLEAKKYKLAARKFLETGPELVNHYNEVIAPQDVATYGGLCALAT 240
           D IT +KLRCAAGL+NL ++KYK AARKF+ET PEL + YNEVI+ QDVA YGGLCALAT
Sbjct: 212 DTITAAKLRCAAGLSNLFSRKYKFAARKFIETSPELGSQYNEVISSQDVAMYGGLCALAT 271

Query: 241 FDRAELKAKVIDNSNFRNFLELVPEVRELVNDFYSSHYASCLEYLGNLKANLLLDIHLHD 300
           FDR ELK KVIDN+ FRNFLELVPEVREL+NDFYSS YA CLEYLGNLK+NLLLDIHLH 
Sbjct: 272 FDRTELKNKVIDNTVFRNFLELVPEVRELINDFYSSRYALCLEYLGNLKSNLLLDIHLHP 331

Query: 301 HVETLYDQIRHKALIQYTLPFVSVDLNMMADAFKTTVVGLQKELEALITDNQIQARIDSH 360
           HVE+LYDQIR KALIQYT PFVSVDLNMMA+AFKTTV GLQKELE+LITDNQIQARIDSH
Sbjct: 332 HVESLYDQIRQKALIQYTHPFVSVDLNMMANAFKTTVAGLQKELESLITDNQIQARIDSH 391

Query: 361 NKILYARHADQRNATFQRVLDTGREFDRDVRSMLLRANLIKHDHNLRALRKL 412
           NK+LYARH D RNATFQR L+ GR+FDRD++SM LR+ L+K++ +   +R+L
Sbjct: 392 NKVLYARHDDLRNATFQRALENGRDFDRDLQSMFLRSCLLKYECSKSRIRRL 443


>Medtr6g025300.1 | 26S proteasome subunit RPN7 | LC |
           chr6:8685707-8690233 | 20130731
          Length = 753

 Score =  232 bits (592), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 146/385 (37%), Positives = 210/385 (54%), Gaps = 68/385 (17%)

Query: 8   IEAYAGLYSGRTKIMRLLFIADA-NKNPTVQLEALRMAYDEIKKGENTHLFREVVKKIDG 66
           IE Y   YSGRT+I RLLFIA   N NP +QL+ L +A++E KKG +  +  +++ ++D 
Sbjct: 211 IEKYISPYSGRTRISRLLFIASHHNNNPAMQLKLLLLAFNETKKGTDVKIMEKILNELDK 270

Query: 67  --KLGPNYNMDSA--WCDAFDRRAEQKREKLENELNAYR--------------------- 101
             ++  ++ +D    WCD+  +  +Q   + EN+L  YR                     
Sbjct: 271 FEEIDRSF-LDEIKDWCDSILKNEKQVYSESENDLTFYRDLLSKLDKIKKEDTFLMKEIA 329

Query: 102 -------------------------TNLIKESIRMGYNDLGDFYYAHGQLGDAFKSYVRT 136
                                      LIK  I  GYND+GDFYYAHG +G A   Y++ 
Sbjct: 330 TCIDMHLGSAYGADEAWCVDIEKNLQTLIKGRICKGYNDIGDFYYAHGDIGSAINMYMKC 389

Query: 137 RDYCTTSKHIIHMCMSAILVSIEMGQFSHVSSYVSKA-----EQTPE---GLDPITVSKL 188
           R YCTT    I M ++AILV IE+GQ   + +++++A        P     +DP    KL
Sbjct: 390 RVYCTTLTETIKMRLNAILVCIELGQLRCLGTHLNRAGVDIKSHDPSVLAAVDPSLFVKL 449

Query: 189 RCAAGLANLEAKKYKLAARKFLETGPELVNHYNEVIAPQDVATYGGLCALATFDRAELKA 248
           RCA  L  L  K+YKLAA KF+E    L N Y EVI+ +DVA YGGLCALA+FD  EL+ 
Sbjct: 450 RCALALNYLYKKEYKLAAEKFIEISTNLGNQYIEVISARDVAIYGGLCALASFDSTELQN 509

Query: 249 KVIDNSNFRNFLELVPEVRELVNDFYSSHYASCL---EYLGNLKANLLLDIHLHDHVETL 305
           KV+DN+ F +FL+ VP+V EL+ +F   +   C+   + L  LK+ L+LDIHL+ HV+TL
Sbjct: 510 KVLDNTVFLDFLKRVPDVWELIVEFNKEN--CCVRPSKSLSKLKSILMLDIHLNSHVDTL 567

Query: 306 YDQIRHKAL---IQYTLPFVSVDLN 327
           Y+QI  +A+    + +LP +   +N
Sbjct: 568 YEQINQRAVSKNFELSLPELQSKIN 592


>Medtr4g104080.1 | 26S proteasome non-ATPase regulatory subunit 6 |
           HC | chr4:43067182-43063680 | 20130731
          Length = 387

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 138/317 (43%), Gaps = 13/317 (4%)

Query: 73  NMDSAWCDAFDRRAEQKREKLENELNAYRTNLIKESIRMGYNDLGDFYYAHGQLGDAFKS 132
           +MD A  D+   + + + +KL+ ++     NL +  +R  +     F+    ++GD  K+
Sbjct: 62  DMDRALLDSMRAKIDDELKKLDEKIADAEENLGESEVREAHLAKSLFFI---RIGDKEKA 118

Query: 133 YVRTRDYCTTSKHI-IHMCMSAILVSIEMG----QFSHVSSYVSKAEQT-PEGLDPITVS 186
               +   T +K + +   M  +  ++++G     F  +S  + KA+    EG D    +
Sbjct: 119 LEHLK--ITETKTVAVGQKMDLVFYTLQLGFFGMDFDLISKSIDKAKSLFEEGGDWERKN 176

Query: 187 KLRCAAGLANLEAKKYKLAARKFLETGPELVNHYNEVIAPQDVATYGGLCALATFDRAEL 246
           +L+   GL  +  + ++ AA  FL++      +  E+        Y  L ++ T DR  L
Sbjct: 177 RLKVYEGLYCMSTRNFEKAATLFLDSISTFTTY--ELFPYDTFIFYTVLTSIITLDRVSL 234

Query: 247 KAKVIDNSNFRNFLELVPEVRELVNDFYSSHYASCLEYLGNLKANLLLDIHLHDHVETLY 306
           K KV+D       +E +P ++E ++  Y   Y S       L   + LD +LH H     
Sbjct: 235 KQKVVDAPEILTVIEKIPHLKEFLDSLYGCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYM 294

Query: 307 DQIRHKALIQYTLPFVSVDLNMMADAFKTTVVGLQKELEALITDNQIQARIDSHNKILYA 366
            +IR     Q+   + SV +  MA AF  +V  +  EL   I   ++  +ID    +L  
Sbjct: 295 REIRTVIYSQFLESYKSVTIEAMAKAFGVSVDFIDVELSRFIAAGKLHCKIDKVAGVLET 354

Query: 367 RHADQRNATFQRVLDTG 383
              D +NA +Q  +  G
Sbjct: 355 NRPDAKNALYQATIKQG 371


>Medtr8g464820.1 | glyceraldehyde-3-phosphate dehydrogenase | LC |
           chr8:22976588-22979363 | 20130731
          Length = 366

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 6/150 (4%)

Query: 163 FSHVSSYVSKAEQT-PEGLDPITVSKLRCAAGLANLEAKKYKLAARKFLETGPELVNHYN 221
           F  +S  + KA+    EG D    ++L+   GL  +  + ++ A   FL++    ++   
Sbjct: 216 FDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCISTRNFEKADTLFLDS----ISTTT 271

Query: 222 EVIAPQDVAT-YGGLCALATFDRAELKAKVIDNSNFRNFLELVPEVRELVNDFYSSHYAS 280
             + P D    Y  L ++ T DR  LK KV+D       +E +P ++E ++  Y   Y S
Sbjct: 272 YELFPYDTFIFYTVLTSIITLDRVSLKQKVVDAPEILTVIEKIPHLKEFLDSLYGCQYKS 331

Query: 281 CLEYLGNLKANLLLDIHLHDHVETLYDQIR 310
                  +   + LD +LH H +    +IR
Sbjct: 332 FFSAFAGMTEQIKLDRYLHPHFQYYMREIR 361


>Medtr8g046560.1 | 26S proteasome non-ATPase regulatory subunit 6 |
           LC | chr8:18658485-18663242 | 20130731
          Length = 523

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 4/146 (2%)

Query: 232 YGGLCALATFDRAELKAKVIDNSNFRNFLELVPEVRELVNDFYSSHYASCLEYLGNLKAN 291
           Y  L ++ T DR  LK KV+D       +E +P ++ +            L  L  L   
Sbjct: 379 YTVLTSIITLDRVSLKQKVVDAPEIFTVIEKIPHLKRVFGLLIWLSIQVFL--LTGLTEQ 436

Query: 292 LLLDIHLHDHVETLYDQIRHKALIQYTLPFVSVDLNMMADAFKTTVVGLQKELEALITDN 351
           + LD +LH H      +IR     Q+   ++ ++   MA AF  +V  +  EL   I   
Sbjct: 437 INLDRYLHPHFRYYMREIRTVIYSQFLESYMIIE--AMAKAFGVSVDFIDVELSRFIAAG 494

Query: 352 QIQARIDSHNKILYARHADQRNATFQ 377
           ++  +ID    +L     D  NA +Q
Sbjct: 495 KLHCKIDKDAGVLETSRPDANNALYQ 520