Miyakogusa Predicted Gene

Lj0g3v0097919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0097919.1 tr|G7KD27|G7KD27_MEDTR Ribosomal RNA small
subunit methyltransferase B OS=Medicago truncatula
GN=MTR,53.85,0.000005, ,CUFF.5466.1
         (91 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g091110.1 | NOL1/NOP2/sun family protein | HC | chr5:39705...    55   1e-08

>Medtr5g091110.1 | NOL1/NOP2/sun family protein | HC |
           chr5:39705460-39695039 | 20130731
          Length = 606

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 31  VNPLNESHGFDAALSM-CRIPNLDYVVFLWCSTPQHIDYGGESLRMEVNVSR 81
           VNPL E    D++L   C+IP LDYVVF+W S P H+DYG  + + EV VSR
Sbjct: 125 VNPLKEDLDSDSSLLFKCKIPGLDYVVFVWGSGPHHVDYGNVAPK-EVIVSR 175