Miyakogusa Predicted Gene

Lj0g3v0097449.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0097449.1 tr|A9TYR9|A9TYR9_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=YDG1501 PE=4
SV=1,45.61,1e-18,coiled-coil,NULL; seg,NULL,CUFF.5438.1
         (117 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g072210.1 | YEATS family protein | HC | chr4:27406685-2740...   177   3e-45
Medtr5g021980.1 | YEATS family protein | HC | chr5:8580679-85832...   132   5e-32

>Medtr4g072210.1 | YEATS family protein | HC |
           chr4:27406685-27401742 | 20130731
          Length = 273

 Score =  177 bits (448), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 81/116 (69%), Positives = 96/116 (82%)

Query: 2   TTKKPVVVELYDEIVFPDPSEAFLSRVQGHPAVNLPRLPAGVTLPPPIPVEDASKRRKGD 61
           +TKKPVVVE YDE+VFPDPSEAFL+R+Q HP VN+PRLPAG+TLPPPIP+EDASKRR+GD
Sbjct: 158 STKKPVVVEFYDEVVFPDPSEAFLARLQNHPVVNMPRLPAGLTLPPPIPIEDASKRRRGD 217

Query: 62  TKDHSLTQWFTNFSEADEXXXXXXXXXXXXXHIAKLRRQISLIDGQQQQFKSTPEQ 117
           TKD+ L+QWF NFSEADE             HI+KL+RQISLIDGQ +Q KS+P+Q
Sbjct: 218 TKDNPLSQWFLNFSEADELLQLAAARQQVQAHISKLKRQISLIDGQHKQLKSSPDQ 273


>Medtr5g021980.1 | YEATS family protein | HC | chr5:8580679-8583227
           | 20130731
          Length = 275

 Score =  132 bits (333), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 76/105 (72%)

Query: 2   TTKKPVVVELYDEIVFPDPSEAFLSRVQGHPAVNLPRLPAGVTLPPPIPVEDASKRRKGD 61
            TK+PVV+E Y+E+VFP+PSEAFL+RVQ HPAV +PRLP G+ LP P+PVE  + + +GD
Sbjct: 162 NTKRPVVIESYNEVVFPEPSEAFLARVQNHPAVVVPRLPDGLNLPSPVPVEPMNDKERGD 221

Query: 62  TKDHSLTQWFTNFSEADEXXXXXXXXXXXXXHIAKLRRQISLIDG 106
           TKDH L  WF NFSEADE             HI KLRRQ++L++G
Sbjct: 222 TKDHPLNHWFLNFSEADELLKLAAARQQVQAHIVKLRRQLTLMEG 266