Miyakogusa Predicted Gene

Lj0g3v0097049.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0097049.1 Non Characterized Hit- tr|I1KS00|I1KS00_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.48525
PE,64.1,0.000002,seg,NULL,CUFF.5390.1
         (69 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g080210.1 | extracellular ligand-gated ion channel protein...    51   2e-07

>Medtr8g080210.1 | extracellular ligand-gated ion channel protein |
           HC | chr8:34461075-34457370 | 20130731
          Length = 498

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 23/40 (57%), Positives = 24/40 (60%)

Query: 11  WMGDCSQCEIYELRGCEMVIVTFQXXXXXXXXXXXXHNLR 50
           WMGDCS+CE YEL GCEMVIV FQ            H LR
Sbjct: 92  WMGDCSECEKYELSGCEMVIVAFQASLAAVSLLCLSHCLR 131