Miyakogusa Predicted Gene

Lj0g3v0096019.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0096019.1 tr|B9I1T3|B9I1T3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_568802 PE=4
SV=1,48.53,0.0000000003,seg,NULL,
gene.Ljchr0_pseudomol_20120828.path1.gene9457.1
         (71 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g076330.2 | hypothetical protein | LC | chr2:31981425-3197...    55   2e-08
Medtr2g076330.1 | hypothetical protein | LC | chr2:31981407-3197...    55   2e-08
Medtr2g076330.3 | hypothetical protein | LC | chr2:31981425-3197...    55   2e-08

>Medtr2g076330.2 | hypothetical protein | LC |
           chr2:31981425-31976396 | 20130731
          Length = 514

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 6/53 (11%)

Query: 15  YSHVICKVLGWDINRLPAIVLRAEFLGSSLTGSKG---DPEKP-ADSDIDNSN 63
           Y+ V+CKV+GWDIN+LPAIVL+   L SSLT S+    +P KP A SD+D+ N
Sbjct: 231 YAQVVCKVVGWDINQLPAIVLKD--LNSSLTASRELLVEPGKPAAASDVDDQN 281


>Medtr2g076330.1 | hypothetical protein | LC |
           chr2:31981407-31976479 | 20130731
          Length = 534

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 6/53 (11%)

Query: 15  YSHVICKVLGWDINRLPAIVLRAEFLGSSLTGSKG---DPEKP-ADSDIDNSN 63
           Y+ V+CKV+GWDIN+LPAIVL+   L SSLT S+    +P KP A SD+D+ N
Sbjct: 231 YAQVVCKVVGWDINQLPAIVLKD--LNSSLTASRELLVEPGKPAAASDVDDQN 281



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 15  YSHVICKVLGWDINRLPAIVLRAEFLGSSLTGSK--GDPEKPADSDIDNSN 63
           Y+ V+CK++GWDIN+LP IVL+   L SS    K   +PEKPA ++ D+ N
Sbjct: 476 YAQVVCKIVGWDINQLPTIVLKD--LNSSAASRKLLAEPEKPAAANDDDRN 524


>Medtr2g076330.3 | hypothetical protein | LC |
           chr2:31981425-31976396 | 20130731
          Length = 513

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 39/53 (73%), Gaps = 6/53 (11%)

Query: 15  YSHVICKVLGWDINRLPAIVLRAEFLGSSLTGSKG---DPEKP-ADSDIDNSN 63
           Y+ V+CKV+GWDIN+LPAIVL+   L SSLT S+    +P KP A SD+D+ N
Sbjct: 210 YAQVVCKVVGWDINQLPAIVLKD--LNSSLTASRELLVEPGKPAAASDVDDQN 260



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%), Gaps = 4/51 (7%)

Query: 15  YSHVICKVLGWDINRLPAIVLRAEFLGSSLTGSK--GDPEKPADSDIDNSN 63
           Y+ V+CK++GWDIN+LP IVL+   L SS    K   +PEKPA ++ D+ N
Sbjct: 455 YAQVVCKIVGWDINQLPTIVLKD--LNSSAASRKLLAEPEKPAAANDDDRN 503