Miyakogusa Predicted Gene

Lj0g3v0095649.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0095649.1 Non Characterized Hit- tr|I3SB34|I3SB34_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.16,0,ZINC_FINGER_C2H2_1,Zinc finger, C2H2; UPF0023,Ribosome
maturation protein SBDS, conserved site; FYSH,CUFF.5302.1
         (359 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g085170.1 | shwachman-bodian-diamond syndrome protein, put...   660   0.0  

>Medtr6g085170.1 | shwachman-bodian-diamond syndrome protein,
           putative | HC | chr6:32124321-32129905 | 20130731
          Length = 358

 Score =  660 bits (1704), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/359 (87%), Positives = 339/359 (94%), Gaps = 1/359 (0%)

Query: 1   MSRLLVQPIGQKRLTNVAVVRLKKHGNRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYS 60
           MSR LVQPIGQKRLTNVAVVRLKKHG RFEIACYPNTVLSWRSGVEKDIDEVLQSHTVY+
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYT 60

Query: 61  NVSKGVLAKSKDLIAAFGTDDHSAICLEILKKGELQVAGKERESLLSSQFRDIATIVMHK 120
           NVSKGVLAKSKDL AAFGTDDHS+ICLEILKKGELQVAGKERES+LSSQFRDIATIVMHK
Sbjct: 61  NVSKGVLAKSKDLNAAFGTDDHSSICLEILKKGELQVAGKERESMLSSQFRDIATIVMHK 120

Query: 121 TYNPETQRPYTISMIERLMREIHFAVDPHSTSKKQALELIHELQKHFPIKRCPLRIRAAA 180
           T+NPET+RPYTISMIERLMR+IHFAVDP+STSKKQALELI ELQKH+PIKRCPLR+RAAA
Sbjct: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNSTSKKQALELIQELQKHYPIKRCPLRVRAAA 180

Query: 181 PEDQVSALLEKLNEWKATVISKEGSAAQLSVIFELEPGLYKDCHDFIMDKMHGRFEVLAH 240
           PE++V  LLEKL+EWKATVISKEG+AAQLSV+FELEPGLYKDCHDF+M+KMHGRFEVLAH
Sbjct: 181 PEEEVPILLEKLSEWKATVISKEGTAAQLSVVFELEPGLYKDCHDFVMNKMHGRFEVLAH 240

Query: 241 SLYVEGDTQVDQYNDDEDMHAPLSKETSESVLELNDKLEKQTISSTSKPTEGQQSKQNKC 300
           SLYV+GDT VD YND EDM APL + T ESVLELNDKL+KQTISS  KP EGQQ KQNKC
Sbjct: 241 SLYVDGDTHVD-YNDHEDMPAPLPQRTPESVLELNDKLQKQTISSGPKPNEGQQPKQNKC 299

Query: 301 NTCNVSFEDSKLYREHHKTDWHKHNMKRKTRQLPPLTEEECTADMELGDSKSDLKDYSF 359
           NTC+  FED+KLYREHHK++WHKHNMKRKTRQLPPL+EEECTADMEL +SKSDLKDYSF
Sbjct: 300 NTCDACFEDAKLYREHHKSEWHKHNMKRKTRQLPPLSEEECTADMELFESKSDLKDYSF 358