Miyakogusa Predicted Gene

Lj0g3v0094919.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0094919.1 Non Characterized Hit- tr|I0YLC7|I0YLC7_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,38.93,0.000000000000002,seg,NULL,CUFF.5265.1
         (199 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g011770.1 | transmembrane protein, putative | HC | chr3:29...   246   1e-65

>Medtr3g011770.1 | transmembrane protein, putative | HC |
           chr3:2986287-2992596 | 20130731
          Length = 216

 Score =  246 bits (627), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 134/196 (68%), Positives = 151/196 (77%), Gaps = 3/196 (1%)

Query: 4   KFVIFTRERVGSLFEFCHLAKLNDNTHLRLIAYTRACSSYSNDNTHELSDAXXXXXXXXX 63
           +F  F++ +  +LF   HL    +NT+L L   T+ CSS +NDN +ELSD+         
Sbjct: 24  RFNCFSKRKCSTLFMHNHLC---NNTNLFLTLRTKPCSSNTNDNAYELSDSTSHEGSAES 80

Query: 64  XXXXXXXXLTNNETLKKLRRYGVSGILSYGLLNTAYYLTTFLVVWLYIAPAPGKMGYLAA 123
                   L+ NE +KKL+RYGVSGILSYGLLNTAYYLTTFL VW YIAPAPGKMGYLAA
Sbjct: 81  EESKKGDSLSINEIMKKLKRYGVSGILSYGLLNTAYYLTTFLFVWFYIAPAPGKMGYLAA 140

Query: 124 AERFLKVMAMVWAGSQVTKLVRAGGALALAPFVDRGLTWFTNKFKFQSQGKAFMTIVGFC 183
            ERFLK+MAMVWAGSQVTKL+RA GALALAP VDRGL+WFTNKFKFQSQGKAFM IVGFC
Sbjct: 141 VERFLKLMAMVWAGSQVTKLLRAAGALALAPIVDRGLSWFTNKFKFQSQGKAFMAIVGFC 200

Query: 184 CGLALIVFLVITLLWA 199
            GLALIVFLVITLLWA
Sbjct: 201 FGLALIVFLVITLLWA 216