Miyakogusa Predicted Gene

Lj0g3v0093659.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0093659.1 Non Characterized Hit- tr|K4BBP3|K4BBP3_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,41.84,3e-19,seg,NULL,CUFF.5163.1
         (149 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g036670.1 | paired amphipathic helix SIN3-like protein | H...   149   1e-36
Medtr5g036670.2 | paired amphipathic helix SIN3-like protein | H...   149   1e-36
Medtr8g062700.3 | paired amphipathic helix SIN3-like protein | H...   102   2e-22
Medtr8g062700.2 | paired amphipathic helix SIN3-like protein | H...   102   2e-22
Medtr8g062700.1 | paired amphipathic helix SIN3-like protein | H...   102   2e-22
Medtr8g062700.4 | paired amphipathic helix SIN3-like protein | H...   102   2e-22
Medtr6g008970.1 | paired amphipathic helix SIN3-like protein | H...    67   5e-12

>Medtr5g036670.1 | paired amphipathic helix SIN3-like protein | HC |
           chr5:16035547-16020987 | 20130731
          Length = 1409

 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 96/146 (65%), Gaps = 1/146 (0%)

Query: 3   ARNSVLRDRRSAMPTVRQAHVVKRERTTVSHCDRDPSVNRPDPDHDRGLLXXXXXXXXXX 62
           ARNS+  DR SAMPT+R+ HV KRERT VSH DRDPSV+RPD DHD G L          
Sbjct: 203 ARNSMFGDRSSAMPTLRRVHVEKRERTIVSHGDRDPSVDRPDQDHDGGSLRAEKERKRRM 262

Query: 63  XXXXDHREDGKRDWERDGRDHE-HDGGRYRERLSHKRKSDRKAEDFGAEPLLDADGFFAK 121
               D +ED  R           HD GR RERLSHKRKSD KAED GAEPLLDAD  F  
Sbjct: 263 EKEKDRKEDRGRRERERDYRDYEHDRGRDRERLSHKRKSDHKAEDSGAEPLLDADQNFGT 322

Query: 122 YPEEFAFCDKVKEKLRNPDDYQEFLK 147
             +E AFCDKVKE+L+NP DYQEFLK
Sbjct: 323 QNQELAFCDKVKERLQNPGDYQEFLK 348


>Medtr5g036670.2 | paired amphipathic helix SIN3-like protein | HC |
           chr5:16035542-16021022 | 20130731
          Length = 1409

 Score =  149 bits (375), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/146 (60%), Positives = 96/146 (65%), Gaps = 1/146 (0%)

Query: 3   ARNSVLRDRRSAMPTVRQAHVVKRERTTVSHCDRDPSVNRPDPDHDRGLLXXXXXXXXXX 62
           ARNS+  DR SAMPT+R+ HV KRERT VSH DRDPSV+RPD DHD G L          
Sbjct: 203 ARNSMFGDRSSAMPTLRRVHVEKRERTIVSHGDRDPSVDRPDQDHDGGSLRAEKERKRRM 262

Query: 63  XXXXDHREDGKRDWERDGRDHE-HDGGRYRERLSHKRKSDRKAEDFGAEPLLDADGFFAK 121
               D +ED  R           HD GR RERLSHKRKSD KAED GAEPLLDAD  F  
Sbjct: 263 EKEKDRKEDRGRRERERDYRDYEHDRGRDRERLSHKRKSDHKAEDSGAEPLLDADQNFGT 322

Query: 122 YPEEFAFCDKVKEKLRNPDDYQEFLK 147
             +E AFCDKVKE+L+NP DYQEFLK
Sbjct: 323 QNQELAFCDKVKERLQNPGDYQEFLK 348


>Medtr8g062700.3 | paired amphipathic helix SIN3-like protein | HC |
           chr8:26215827-26198402 | 20130731
          Length = 1405

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 91/161 (56%), Gaps = 19/161 (11%)

Query: 4   RNSVLRDRRSAMPTVRQAHVVKRERTTVSHCDRDPSVNRPDPDHDRGLLXXXXXXXXXXX 63
           RN +LRDR SAM T RQ HV KRE+TT  H DRD SV+ PDP+ DRG++           
Sbjct: 204 RNPLLRDRSSAMTTGRQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRRER 263

Query: 64  XXXDHREDGKRDWERDGRDHEHDGGRYRERLSHKRKSDRKAEDFG-AEPLLDADGFFAKY 122
                 E  +R+ ERD RD+++DG    ERL HK+KS  +A D G AEPL DAD      
Sbjct: 264 EKDRREERDRRERERDDRDYDNDGN--LERLPHKKKSVHRATDPGTAEPLHDADEKLDLL 321

Query: 123 PEE----------------FAFCDKVKEKLRNPDDYQEFLK 147
           P                   AF +KVKEKL+NPDDYQEFLK
Sbjct: 322 PNSSTCEDKSSLKSLCSPVLAFLEKVKEKLKNPDDYQEFLK 362


>Medtr8g062700.2 | paired amphipathic helix SIN3-like protein | HC |
           chr8:26215827-26198402 | 20130731
          Length = 1405

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 91/161 (56%), Gaps = 19/161 (11%)

Query: 4   RNSVLRDRRSAMPTVRQAHVVKRERTTVSHCDRDPSVNRPDPDHDRGLLXXXXXXXXXXX 63
           RN +LRDR SAM T RQ HV KRE+TT  H DRD SV+ PDP+ DRG++           
Sbjct: 204 RNPLLRDRSSAMTTGRQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRRER 263

Query: 64  XXXDHREDGKRDWERDGRDHEHDGGRYRERLSHKRKSDRKAEDFG-AEPLLDADGFFAKY 122
                 E  +R+ ERD RD+++DG    ERL HK+KS  +A D G AEPL DAD      
Sbjct: 264 EKDRREERDRRERERDDRDYDNDGN--LERLPHKKKSVHRATDPGTAEPLHDADEKLDLL 321

Query: 123 PEE----------------FAFCDKVKEKLRNPDDYQEFLK 147
           P                   AF +KVKEKL+NPDDYQEFLK
Sbjct: 322 PNSSTCEDKSSLKSLCSPVLAFLEKVKEKLKNPDDYQEFLK 362


>Medtr8g062700.1 | paired amphipathic helix SIN3-like protein | HC |
           chr8:26215827-26198402 | 20130731
          Length = 1406

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 91/161 (56%), Gaps = 19/161 (11%)

Query: 4   RNSVLRDRRSAMPTVRQAHVVKRERTTVSHCDRDPSVNRPDPDHDRGLLXXXXXXXXXXX 63
           RN +LRDR SAM T RQ HV KRE+TT  H DRD SV+ PDP+ DRG++           
Sbjct: 204 RNPLLRDRSSAMTTGRQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRRER 263

Query: 64  XXXDHREDGKRDWERDGRDHEHDGGRYRERLSHKRKSDRKAEDFG-AEPLLDADGFFAKY 122
                 E  +R+ ERD RD+++DG    ERL HK+KS  +A D G AEPL DAD      
Sbjct: 264 EKDRREERDRRERERDDRDYDNDGN--LERLPHKKKSVHRATDPGTAEPLHDADEKLDLL 321

Query: 123 PEE----------------FAFCDKVKEKLRNPDDYQEFLK 147
           P                   AF +KVKEKL+NPDDYQEFLK
Sbjct: 322 PNSSTCEDKSSLKSLCSPVLAFLEKVKEKLKNPDDYQEFLK 362


>Medtr8g062700.4 | paired amphipathic helix SIN3-like protein | HC |
           chr8:26215827-26198402 | 20130731
          Length = 1406

 Score =  102 bits (253), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 91/161 (56%), Gaps = 19/161 (11%)

Query: 4   RNSVLRDRRSAMPTVRQAHVVKRERTTVSHCDRDPSVNRPDPDHDRGLLXXXXXXXXXXX 63
           RN +LRDR SAM T RQ HV KRE+TT  H DRD SV+ PDP+ DRG++           
Sbjct: 204 RNPLLRDRSSAMTTGRQMHVDKREKTTTLHADRDLSVDHPDPELDRGVMRTDKEQRRRER 263

Query: 64  XXXDHREDGKRDWERDGRDHEHDGGRYRERLSHKRKSDRKAEDFG-AEPLLDADGFFAKY 122
                 E  +R+ ERD RD+++DG    ERL HK+KS  +A D G AEPL DAD      
Sbjct: 264 EKDRREERDRRERERDDRDYDNDGN--LERLPHKKKSVHRATDPGTAEPLHDADEKLDLL 321

Query: 123 PEE----------------FAFCDKVKEKLRNPDDYQEFLK 147
           P                   AF +KVKEKL+NPDDYQEFLK
Sbjct: 322 PNSSTCEDKSSLKSLCSPVLAFLEKVKEKLKNPDDYQEFLK 362


>Medtr6g008970.1 | paired amphipathic helix SIN3-like protein | HC |
           chr6:2536170-2526712 | 20130731
          Length = 1387

 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/159 (37%), Positives = 80/159 (50%), Gaps = 29/159 (18%)

Query: 3   ARNSV--LRDRRSAMPTVRQAHVVKRE--RTTVSHCDRDPSVNRPDPDHDRGLLXXXXXX 58
            RNS+  L +R S  P +RQ  V K+   R   S  DRD SV RPD D D+ ++      
Sbjct: 225 GRNSMQRLNERSSMAPMMRQMQVDKQRYRRDRFSSHDRDISVERPDLDDDKTMMNF---- 280

Query: 59  XXXXXXXXDHREDGKRD------WERDGRDHEHDGGR--YRERLSHKRKSDRKAE--DFG 108
                    H+E  KR+       + D R+H+ D  R  + +R   K+KS +K E  DF 
Sbjct: 281 ---------HKEQRKRESRDRRMRDHDDREHDLDNSRDLHSQRFPDKKKSVKKTEAYDFA 331

Query: 109 AEPLLDADGFFAKYPEEFAFCDKVKEKLRNPDDYQEFLK 147
           A    D DG    Y +  +FCDKVKEKL + +DYQ FLK
Sbjct: 332 AHD--DKDGMKLMYSQAISFCDKVKEKLSSAEDYQTFLK 368