Miyakogusa Predicted Gene

Lj0g3v0093179.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0093179.1 Non Characterized Hit- tr|I1LUY5|I1LUY5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.10890
PE,88.46,2e-19,SUBFAMILY NOT NAMED,NULL; FAMILY NOT
NAMED,NULL,CUFF.5116.1
         (59 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g079710.1 | NADPH-protochlorophyllide oxidoreductase | HC ...    99   6e-22

>Medtr2g079710.1 | NADPH-protochlorophyllide oxidoreductase | HC |
           chr2:33582833-33579928 | 20130731
          Length = 399

 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/54 (87%), Positives = 50/54 (92%)

Query: 6   VMQVVGDPSLTKSGVYWSWNKDSASFENQLSQEASDADKARKVWEISEKLVGLA 59
           + QVV DPSLTKSGVYWSWNK SASFENQLSQEASD +KARKVWE+SEKLVGLA
Sbjct: 346 LAQVVSDPSLTKSGVYWSWNKASASFENQLSQEASDVEKARKVWEVSEKLVGLA 399