Miyakogusa Predicted Gene
- Lj0g3v0092909.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0092909.1 tr|G7LG09|G7LG09_MEDTR DNA-directed RNA
polymerase OS=Medicago truncatula GN=MTR_8g038990 PE=3
SV=1,68.75,0,RNA_pol_Rpb1_2,RNA polymerase, alpha subunit;
RNA_pol_Rpb1_5,RNA polymerase Rpb1, domain 5; RNA_pol_,CUFF.5297.1
(1584 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr8g038990.1 | DNA-directed RNA polymerase | HC | chr8:144590... 2248 0.0
Medtr5g011000.1 | DNA-directed RNA polymerase | HC | chr5:306076... 290 8e-78
Medtr8g066100.1 | DNA-directed RNA polymerase, putative | HC | c... 253 8e-67
Medtr5g023020.1 | DNA-directed RNA polymerase | HC | chr5:913015... 158 4e-38
Medtr4g061700.1 | DNA-directed RNA polymerase I protein | HC | c... 112 2e-24
Medtr4g086290.1 | DNA-directed RNA polymerase I protein | HC | c... 96 4e-19
Medtr4g086290.2 | DNA-directed RNA polymerase I protein | HC | c... 96 4e-19
Medtr4g061800.1 | DNA-directed RNA polymerase I protein | HC | c... 96 4e-19
Medtr0002s0510.1 | DNA-directed RNA polymerase subunit beta | LC... 72 4e-12
Medtr3g062790.1 | DNA-directed RNA polymerase subunit beta | HC ... 66 3e-10
Medtr3g062770.1 | DNA-directed RNA polymerase subunit beta | HC ... 66 3e-10
Medtr4g051130.1 | DNA-directed RNA polymerase subunit beta | HC ... 66 3e-10
Medtr8g016510.1 | DNA-directed RNA polymerase subunit beta | HC ... 57 2e-07
>Medtr8g038990.1 | DNA-directed RNA polymerase | HC |
chr8:14459096-14475944 | 20130731
Length = 2010
Score = 2248 bits (5826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1144/1641 (69%), Positives = 1289/1641 (78%), Gaps = 90/1641 (5%)
Query: 1 MEENPTLSFLDGNVVGIQFGMATRQEICTXXXXXXXXXXXXXXXNPFLGLPLEYGRCESC 60
ME+N T S LDG VVGI+F MATR EI T NPFLGLPLE+GRCESC
Sbjct: 23 MEDNATTSLLDGKVVGIRFSMATRHEISTASISDSQISHASQLANPFLGLPLEFGRCESC 82
Query: 61 GTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKKTKFPSSSSGLAQRL 120
GTSEAGKCEGHFGYIELPVPIYHPSHV+ELKK+LSLVCL+CL++KKTK PSSSSGLAQRL
Sbjct: 83 GTSEAGKCEGHFGYIELPVPIYHPSHVTELKKILSLVCLSCLRLKKTKVPSSSSGLAQRL 142
Query: 121 LSPCCQEPNAAQVSIREVKTGDGACYLVLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALL 180
LSPCC++ NAAQVSIREVKT DGACYL LKVSKSKM DGFW FL+KYGYRY DHTRALL
Sbjct: 143 LSPCCEDVNAAQVSIREVKTADGACYLALKVSKSKMHDGFWTFLEKYGYRYGGDHTRALL 202
Query: 181 PCEVMEMIKRFPLETKKKLAGKGYFPQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXX 240
PCE ME+IKR P ETKKKLAGKGYFPQDGY++KYLPVPPNCL
Sbjct: 203 PCEAMEIIKRLPQETKKKLAGKGYFPQDGYILKYLPVPPNCLSVPVVSDGVSIMSSDPAL 262
Query: 241 TFLRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVN 300
T LRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRG +K ARDIETH+GVN
Sbjct: 263 TILRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGTSKAARDIETHYGVN 322
Query: 301 KELSDASNKAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVN 360
KEL+D+S KAWL+KM++LFI KGSGFSSR+VITGDGYK+INEVGIP E+AQRITFEERV+
Sbjct: 323 KELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERVS 382
Query: 361 SHNMCYLQKLVDENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPP 420
HN+ YLQKLVDENLCL YKEG+STYSLREGSKGHTYLKPGQIVHRRIMDGD VFINRPP
Sbjct: 383 IHNIHYLQKLVDENLCLTYKEGMSTYSLREGSKGHTYLKPGQIVHRRIMDGDTVFINRPP 442
Query: 421 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVE 480
TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV+ELFSVE
Sbjct: 443 TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVE 502
Query: 481 KQLLSSHXXXXXXXXXXXXXXXXXXXVKKGFMDRAAANQMAMFLSLPLPQPALLKAGSGD 540
KQLLSSH VK F+DR AANQMAMFL LPLP PALLKA +GD
Sbjct: 503 KQLLSSHSGNLNLQLSADSLLSLKMLVKSCFLDRVAANQMAMFLLLPLPMPALLKATTGD 562
Query: 541 CYWTSTQILQCALPLSFDCTGGRYLIRESDILGFDLGRDVLPAVINEIAASVFFGKGPQE 600
YWTS QILQCALP SFDCTGGRYLIR+ +IL FD RD+LP++INEIAAS+FF KGPQE
Sbjct: 563 SYWTSIQILQCALPFSFDCTGGRYLIRQREILEFDFTRDILPSIINEIAASIFFSKGPQE 622
Query: 601 ALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFIYNELV 660
ALNFFDV+QPFLME IF++GFSVGL DFSIS AVKR+ +R+IGKVSPLL QLR +Y ELV
Sbjct: 623 ALNFFDVIQPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLRGMYKELV 682
Query: 661 AQQLEKHMQDIELPAIKFASKSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSK 720
AQQLEK +QDIELP I FA KS++LGD+IDSKSKSA+DKV QQIGFLGQQLF RG+ YSK
Sbjct: 683 AQQLEKVIQDIELPVINFALKSTKLGDLIDSKSKSAVDKVIQQIGFLGQQLFERGKFYSK 742
Query: 721 GLLEDVASHFKLKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGL 780
GL+EDVASHF+LKC YD D YPSAE+GLLKGCFFHGLDP+EELVHSI+TREI+ RSSRGL
Sbjct: 743 GLVEDVASHFQLKCFYDKDDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGL 802
Query: 781 SEPGTLFKNLMAILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFPAGEHVGVLA 840
SEPGTLFKNLMAILRDVV+CYDGTVRNVCSNSIIQFEYG+++GD A +LFPAGE VGVLA
Sbjct: 803 SEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGIQSGDAAQHLFPAGEPVGVLA 862
Query: 841 ATAMSNPAYKAVLDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCR 900
AT+MSNPAYKAVLDASPSSN SW MKEILLCKV+FRNEP DRRVILYLNDCDCGR+YCR
Sbjct: 863 ATSMSNPAYKAVLDASPSSNSSWGFMKEILLCKVNFRNEPNDRRVILYLNDCDCGRNYCR 922
Query: 901 ENAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEIDAGLVGHIHLDEVKLEELKINM 960
ENAAY V+NQLRKVSLKD A+DFIVEYQQQR+R+ DAGLV HI L EVKLEELKINM
Sbjct: 923 ENAAYLVQNQLRKVSLKDAALDFIVEYQQQRRRRDGTEDAGLVCHIRLKEVKLEELKINM 982
Query: 961 AEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAPCLTFIWPAGDGNDLHET 1020
EV+Q+CQEKL+SF+RK+K + FKRTEL FSE C SAPC+TF+WP DG DL +T
Sbjct: 983 TEVYQKCQEKLNSFSRKKKLSPFFKRTELIFSEFC-----SAPCVTFLWP--DGVDLDQT 1035
Query: 1021 TKILADTICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNGELALDIILEKES 1080
TK+LAD ICP LL+TIIQGDPRI+SA+IIWVNP TNTWVRNPSKSSNGELALD+ILEKE+
Sbjct: 1036 TKVLADMICPVLLETIIQGDPRISSASIIWVNPGTNTWVRNPSKSSNGELALDVILEKEA 1095
Query: 1081 IKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVKMVA 1140
+KQ+GDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGI+CTFDQAIQRLAASV+MVA
Sbjct: 1096 VKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGIACTFDQAIQRLAASVRMVA 1155
Query: 1141 KGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLFTPKRCFERAAEK 1200
KGVLREHLILLASSMTCGGNLVGFNTGGYK LARQL+IQVPFTDATLFTP++CFERAAEK
Sbjct: 1156 KGVLREHLILLASSMTCGGNLVGFNTGGYKTLARQLDIQVPFTDATLFTPRKCFERAAEK 1215
Query: 1201 CHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYNFLHMVKSLTNGE 1260
H+DSLSSIVASCSWGK VAVGTGSKFD++WD KEIK+N+++GM+VY FL+MVK L NGE
Sbjct: 1216 HHSDSLSSIVASCSWGKHVAVGTGSKFDIVWDPKEIKTNEIEGMNVYKFLNMVKGLANGE 1275
Query: 1261 EENNACXXXXXXXXXXXXNADYSLSPQHTSGVDAVFEETFEAMNGPESNGWGSNTDRTE- 1319
EE NAC N D+ +SPQH SG DAVF+ETFE NG SNGW SN D+ +
Sbjct: 1276 EETNACLGEDIDDLFDDENGDFDMSPQHASGFDAVFDETFELPNGSTSNGWDSNKDQIDQ 1335
Query: 1320 --TNSTQWSAWESNKAETKDGGSQRVHEDS-----WTSRDVMKDDSQMTNAW-DGNVEQT 1371
TNS WS W NK++ + + EDS W + K D Q +AW V++
Sbjct: 1336 PNTNSNDWSGWGPNKSDLQ---VDVIQEDSSKSSAWGAATNQKSD-QSASAWGKAVVQED 1391
Query: 1372 KTISNDW-TAWGKNKSEIQDNVAEKAEGECGSSEKWKTAVIQEGSSKSNAW--------- 1421
+ S W TA +N + A + + S+ W AV+QE SSKS AW
Sbjct: 1392 SSKSGAWGTATNQNSQQPSWGAATNQKSD-QSASAWGKAVVQEDSSKSGAWGNAKSVVQE 1450
Query: 1422 -------KSNIEQRSDEDSW---------------TSQKLKADVIQ-DSSKPSSWGAKPK 1458
+N SD+ W ++K KADV Q DS+ W A
Sbjct: 1451 DSSKSGAPANTNHSSDQSCWGQITGGEERAQGESGGTKKWKADVSQEDSTNSGGWKA--- 1507
Query: 1459 SNDSSNWGRNKDEIQDVVSRRAEDDSWSSKK-QLSSDATQEDSSKFSFWGGNKDTTKPKS 1517
WG +K E+ + S + + DSW+S+K + D TQ+DS K S WG TK KS
Sbjct: 1508 ------WGSSKPEVHEGESTKVQ-DSWNSQKWKAGEDVTQKDSQKSSAWGA----TKLKS 1556
Query: 1518 ND----------WSSWGGNRDGIQDGGSKRAQDDSWSSQK-----DVTRESSSKVDAWGA 1562
ND W +WG ++ + +G S + Q DSW+SQK DV+++ S K AWG
Sbjct: 1557 NDIQEDSTNSGGWKAWGSSKPEVHEGESTKVQ-DSWNSQKWKAAEDVSQKDSQKSSAWG- 1614
Query: 1563 NNEASNPKSND-WSAWGKNKD 1582
A+ PKSND S+WG+ KD
Sbjct: 1615 ---ATKPKSNDNRSSWGQKKD 1632
Score = 90.1 bits (222), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/309 (28%), Positives = 141/309 (45%), Gaps = 61/309 (19%)
Query: 1320 TNSTQWSAWESNKAETKDGGSQRVHEDSWTSR------DVMKDDSQMTNAW------DGN 1367
TNS W AW S+K E +G S +V +DSW S+ DV + DSQ ++AW +
Sbjct: 1500 TNSGGWKAWGSSKPEVHEGESTKV-QDSWNSQKWKAGEDVTQKDSQKSSAWGATKLKSND 1558
Query: 1368 VEQTKTISNDWTAWGKNKSEIQDNVAEKAEGECGSSEKWKTA--VIQEGSSKSNAWKSNI 1425
+++ T S W AWG +K E+ + + K + + +S+KWK A V Q+ S KS+AW +
Sbjct: 1559 IQEDSTNSGGWKAWGSSKPEVHEGESTKVQ-DSWNSQKWKAAEDVSQKDSQKSSAWGATK 1617
Query: 1426 EQRSD-EDSWTSQKLKADVI-QDSSKPSSWGAKPKS-NDS---------SNWGR------ 1467
+ +D SW +K + V+ +DSS+ ++W KP++ DS S+WG+
Sbjct: 1618 PKSNDNRSSWGQKKDEIHVMPEDSSRSNAWEQKPENVKDSWVAKVPVANSSWGKAKSPEN 1677
Query: 1468 ----NKDEIQDVVSR--RAEDDSWSSKKQLSSDATQEDSSKFSFWGGNKDTT----KPKS 1517
+K+E + + E++ W SK + S + S + W ++ KPKS
Sbjct: 1678 RPWDSKNEPNNSFGKPNSQENEPWDSKNESDSSWGKPKSQESQPWDSKNESNSSWGKPKS 1737
Query: 1518 NDWSSWGGNRDGIQDGGSKRAQDDSWSSQKDVTRESSSKVDAWGAN------------NE 1565
+ W + Q GS+ W SQ S K WG ++
Sbjct: 1738 QENHPWDSKNESNQTAGSR-----GWDSQVASANSESDKSFQWGKQGRDSFKKNRFEGSQ 1792
Query: 1566 ASNPKSNDW 1574
+ P + DW
Sbjct: 1793 SGGPNAGDW 1801
>Medtr5g011000.1 | DNA-directed RNA polymerase | HC |
chr5:3060764-3075383 | 20130731
Length = 1519
Score = 290 bits (742), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 288/1082 (26%), Positives = 460/1082 (42%), Gaps = 146/1082 (13%)
Query: 270 ANDLQSVVDQYLQIRGCAKPAR---DIETHFGVNKELSDASNKAWLDKMKSLFISKGSGF 326
AN+L S V L+ P R +I T K +A N + L MK + + K +
Sbjct: 272 ANELSSRVLDCLRFSK-INPDRTPVNIFTELQQRKVGENACNSSGLRWMKDVVLGKRNDC 330
Query: 327 SSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN-----MCYLQKLVDENLCLAYKE 381
+ R+V+ GD ++E+GIP +IA+ + E VN N C +L+++ +
Sbjct: 331 TFRTVVVGDPDLELSEIGIPCQIAEALQVSEYVNRQNRQNLLYCCELRLLEKGQINVRRN 390
Query: 382 G--VSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHD-DH 438
G V Y + L+ G I +R ++DGD V INRPP+ H+HS+ AL V +
Sbjct: 391 GNPVVLYKKED-------LQIGDIFYRPLVDGDKVLINRPPSIHQHSMIALTVRVLPISS 443
Query: 439 TVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXXX 498
V INP+ C PL DFDGDC+H + PQS+ A+ E+ EL ++++QL++
Sbjct: 444 VVSINPICCSPLRGDFDGDCLHGYIPQSVGARVELNELVALDRQLINGQSGGNLLSLSQD 503
Query: 499 XXXXXXXXVKKGF-MDRAAANQMAMFLSLPLPQPALLKAGSGDC-YWTSTQILQCALPLS 556
++ G + Q+ M + L PA+ KA S + +W+ Q+ LP
Sbjct: 504 SLTAAHLLLEDGVGFNIYQVQQLEMLCNKELTSPAIFKAPSSNTPFWSGKQLFSMLLPSK 563
Query: 557 FDCT--GGRYLIRESDILGFDLGRDVLPAVINEIAASV---FFGKGPQEALNFFDVLQPF 611
FD +++ +++ L N + S+ F GK L+ Q
Sbjct: 564 FDYAFPSNDVFVKDGELISCSESSGWLRDSENNVFQSLVEHFQGK----ILDVLHGAQKA 619
Query: 612 LMECIFSNGFSVGLHDFSISGAVKRITDRNIGKVSPLLYQLRFI-----YNELVAQQLEK 666
L E + GFSV L D +S +N+ + + Y LR +N+L+
Sbjct: 620 LCEWLSMTGFSVSLSDLYLSS--DSYARKNM--MEEISYGLRVAEQACDFNQLLVDHYSD 675
Query: 667 HM----------------------------------------QDIELPAIKFASKSSRLG 686
+ ++I+ A K A K +
Sbjct: 676 FLSASPEENEKFVTVDVDRLNHERQISAAQSQASVDAFRHVFRNIQSLADKHACKDNSFL 735
Query: 687 DMIDSKSKSALDKVTQQIGFLG-QQLFVR------------GRLYSKGL--LEDVASHFK 731
M + SK L K+ Q LG Q VR G KGL +E + +
Sbjct: 736 AMFKAGSKGNLLKLVQHSMCLGLQHSLVRLSYRIPRELSCAGWNSQKGLHSMEMSSDTLE 795
Query: 732 LKCDYDGDGYPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLM 791
K Y + +++ F GL+P E VHS++ R+ + L PGTL + LM
Sbjct: 796 PKQSY-------IAHAVVESSFLTGLNPLECFVHSVTNRDSSFSDNADL--PGTLTRRLM 846
Query: 792 AILRDVVVCYDGTVRNVCSNSIIQFEYGLKAGDNASYLFP----AGEHVGVLAATAMSNP 847
+RD+ YDGTVRN+ N +IQF Y + + F GE VG L+A A+S
Sbjct: 847 FFMRDMYDAYDGTVRNLYGNQLIQFSYDAEEDSSCDSYFREDIIGGEPVGALSACAVSEA 906
Query: 848 AYKAV------LDASPSSNCSWELMKEILLCKVHFRNEPIDRRVILYLNDCDCGRSYCRE 901
AY A+ L+ASP N +K +L C R + D+ V L+L++ + E
Sbjct: 907 AYSALSQPISLLEASPLLN-----LKNVLECGS--RKKGGDQTVSLFLSEKIGKQRNGFE 959
Query: 902 NAAYAVKNQLRKVSLKDTAVDFIVEYQQQRKRKGSEID-AGLVGHIHLDEVKLEELKINM 960
AA VKN L + + ++ + Q S++ + V H HLD+ + K+ +
Sbjct: 960 YAALEVKNYLERYMFSNIVSTVMIIFTPQH---CSQVKYSPWVCHFHLDKENVTRRKLEV 1016
Query: 961 AEVFQRCQEKLDSFNRKRKFNQIFKRTELFFSESCVSPNFSAPCLTFIWPAGDGNDLHET 1020
+ ++ DSF R+ K I ++ + CV + T + DG D T
Sbjct: 1017 HSIIDSLYQQYDSFRRESKV--ILPSLKISSKKWCVDYKANEGGETSVGNEKDGEDC-IT 1073
Query: 1021 TKILADT------------ICPALLDTIIQGDPRINSANIIWVNPDTNTWVRNPSKSSNG 1068
++ D+ + P LL T I+G I +I+W + T N S G
Sbjct: 1074 VAVVEDSKNSVQLDSVRKSLIPFLLQTAIKGFLEIKKVDILWKDLPKVTKSYN---GSAG 1130
Query: 1069 ELALDIILEKESIKQNGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQA 1128
EL L + + S NG W +++ C ++ LID RS P I GI +
Sbjct: 1131 ELYLRVTMS--SGNDNGTFWGRLINHCHRIMPLIDWTRSHPDNIHHFCSAFGIDAGWQHY 1188
Query: 1129 IQRLAASVKMVAKGVLREHLILLASSMTCGGNLVGFNTGGYKALARQLNIQVPFTDATLF 1188
L+++ K +L +HL L+A+S++ G VG N G + ++ PF A
Sbjct: 1189 FHNLSSATSDTGKSILPKHLRLVANSLSASGEFVGLNAKGMARQRKHASVSSPFVQACFS 1248
Query: 1189 TPKRCFERAAEKCHTDSLSSIVASCSWGKPVAVGTGSKFDVLWDAKEIKSNDLDGMDVYN 1248
P F +AA+ D+L + + +WG + +GTG +FD+++ K + N +DVY
Sbjct: 1249 NPGSSFLKAAKSGIVDNLQGNLDALAWGNCLPMGTGGQFDIIYSEKVEEIN--KSVDVYG 1306
Query: 1249 FL 1250
L
Sbjct: 1307 LL 1308
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 48 LGLPLEYGRCESCGTSEAGKCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNCLKMKK 106
LGLP C +CG+ + CEGHFG I+ P I HP ++E+ ++L +C C +++
Sbjct: 49 LGLPNSSYGCTTCGSKDRKSCEGHFGAIKFPFTILHPYFMAEIAEILQKICPACKSIRQ 107
>Medtr8g066100.1 | DNA-directed RNA polymerase, putative | HC |
chr8:27456109-27455340 | 20130731
Length = 245
Score = 253 bits (647), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 129/175 (73%), Positives = 145/175 (82%), Gaps = 1/175 (0%)
Query: 313 DKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVD 372
+KM++LFI KGSGFSSR+VITGDGYK+INEVGIP E+AQRITFEERV+ N+ YLQKLVD
Sbjct: 48 EKMRTLFIRKGSGFSSRTVITGDGYKKINEVGIPLEVAQRITFEERVSILNIHYLQKLVD 107
Query: 373 ENLCLAYKEGVSTYSLREGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVV 432
ENLCL YKEG+STYSLREGSKGHTYLKPGQIVH + G I+F + + +
Sbjct: 108 ENLCLTYKEGMSTYSLREGSKGHTYLKPGQIVHGGLWTG-ILFSSTDCQLPTSTPCKRLW 166
Query: 433 YIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSH 487
YI VKINPLICGPLGADFDGDCVHLFYPQSLAAKAEV+ELFSVEKQLLSS+
Sbjct: 167 YISMTTRVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSY 221
>Medtr5g023020.1 | DNA-directed RNA polymerase | HC |
chr5:9130153-9139413 | 20130731
Length = 1834
Score = 158 bits (400), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 138/559 (24%), Positives = 236/559 (42%), Gaps = 59/559 (10%)
Query: 309 KAWLDKMKSLFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQ 368
KA +++ + K FS+R+VIT D I+++G+P IA +T+ E V +N+ L+
Sbjct: 340 KAKEGRIRGNLMGKRVDFSARTVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLK 399
Query: 369 KLVDENLCLAYKEGVSTYSLREGSK----------GHTYLKPGQIVHRRIMDGDIVFINR 418
+LV+ + + Y +R+ + +L+ G V R + DGD V NR
Sbjct: 400 ELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNR 459
Query: 419 PPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFS 478
P+ HK S+ + I T ++N + P ADFDGD +++ PQS +AEV+EL
Sbjct: 460 QPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMM 519
Query: 479 VEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMF---LSLPLPQPALL 534
V K ++S K+ F+ + + M+ +P P +L
Sbjct: 520 VPKCIVSPQANRPVMGIVQDSLLGCRKITKRDTFISKDVFMNILMWWEDFDGKVPAPTIL 579
Query: 535 KAGSGDCYWTSTQILQCALPLSFD---------------CTGGRYLIR--ESDILGFDLG 577
K + WT Q+ +P + T G ++R + ++L L
Sbjct: 580 KP---EPLWTGKQVFNLIIPKQINLIRYSSWHNENERGPITPGDTMVRIEKGELLTGTLC 636
Query: 578 RDVLPAVINEIAASVFFGKGPQEALNFFDVLQPFLMECIFSNGFSVGLHDFSISGAVKRI 637
+ L + ++ GP A F Q + + FS+G+ D +
Sbjct: 637 KKTLGTGTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQQAFSIGIGDTIADASTMET 696
Query: 638 TDRNIGKVSPLLYQL--------------RFIYNEL---VAQQLEKHMQDIELPAIKFAS 680
++ I + + QL R + + V Q L + D A K S
Sbjct: 697 INQTISQAKDKVKQLIREAQEKKLEAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLS 756
Query: 681 KSSRLGDMIDSKSKSALDKVTQQIGFLGQQLFVRGRLYSKGLLEDVASHFKLKCDYDGDG 740
+S+ L M+ + SK + ++Q +GQQ V G+ G ++ HF D
Sbjct: 757 ESNNLKAMVTAGSKGSFINISQMTACVGQQ-NVEGKRIPFGFIDRTLPHFT------KDD 809
Query: 741 YPSAEYGLLKGCFFHGLDPFEELVHSISTREIMVRSSRGLSEPGTLFKNLMAILRDVVVC 800
Y G ++ + GL P E H++ RE ++ ++ SE G + + L+ + D++V
Sbjct: 810 YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 869
Query: 801 YDGTVRNVCSNSIIQFEYG 819
YDGTVRN + +IQF YG
Sbjct: 870 YDGTVRNSLGD-VIQFLYG 887
>Medtr4g061700.1 | DNA-directed RNA polymerase I protein | HC |
chr4:22846383-22818964 | 20130731
Length = 1379
Score = 112 bits (281), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 132/564 (23%), Positives = 222/564 (39%), Gaps = 112/564 (19%)
Query: 59 SCGTSEAG--KCEGHFGYIELPVPIYHPSHVSELKKMLSLVCLNC--------------L 102
SC T C+GH+GY+ L P+++ +S + K+L +C C +
Sbjct: 77 SCATCHGNFTDCQGHYGYLPLAQPVFNVGFLSTIVKILKCICKKCARILLPEKDCKKWLV 136
Query: 103 KMKKTKFPSSSSGL---------------AQRLLSPCCQEPNAAQVSIREVKTGDGACYL 147
KM+ K GL A+++ P C N A VK +
Sbjct: 137 KMRNPKL----DGLQKMNMLESIMKKFKSAKQIECPRCGYINGA------VKHNKPTLSI 186
Query: 148 VLKVSKS------KMQDGFWRFLDKYGYRYEVDHT-RALLPCEVMEMIKRFPLETKKKLA 200
V SK+ ++Q YR D T R L P V+E+ K+ E K L
Sbjct: 187 VHDCSKANNDDVAELQSALPHI---NNYRACNDLTSRPLNPVVVLELFKKMHGEDCKLL- 242
Query: 201 GKGYFPQ--DGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRS 258
Y + + +I + VPP + L+K+++ ++
Sbjct: 243 ---YIAEKPENLIITNIAVPPIVIRPSVMMDGQSNENDITEK--LKKIIQANAIM----- 292
Query: 259 GEPNFESHQVEANDLQSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSL 318
Q E+ + Q D YL ++ E +N ++ + K +
Sbjct: 293 --------QQESVETQKYQDGYLMLQ--------FEVAQYINSDVKGGPYNPQMSKSLTG 336
Query: 319 FISKGSG---------------FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHN 363
FI + G ++ R+VI+ D +I EV IP +A+ +T+ ERV HN
Sbjct: 337 FIQRIKGKQGRFRSNLSGKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHN 396
Query: 364 MCYLQKLVDEN------LCLAYKEGVSTYSLREGSKGHTY--LKPGQIVHRRIMDGDIVF 415
+ L++ V + + G ++++LR S+ LK G IV R I DGDIV
Sbjct: 397 IEKLRQCVRNGPDKYPGARMLKEAGGNSWNLRVSSRTRRADELKFGDIVERHIEDGDIVI 456
Query: 416 INRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVE 475
NR P+ H+ S+ + + T++ N +C P ADFDGD ++L PQ+ A+ E +
Sbjct: 457 FNRQPSLHRMSMMSHRARVMPWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEALL 516
Query: 476 LFSVEKQLLSSHXXXXXXXXXXXXXXXXXXXVKK-GFMDRAAANQMAMFLS-----LPLP 529
L +V+ L + +K F DR++ + + ++ + LP
Sbjct: 517 LMTVQNNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRSSFSLICSYMGDGMDPIDLP 576
Query: 530 QPALLKAGSGDCYWTSTQILQCAL 553
PA++K W+ Q+ L
Sbjct: 577 TPAIIKPVE---LWSGKQLFSILL 597
>Medtr4g086290.1 | DNA-directed RNA polymerase I protein | HC |
chr4:33799127-33783168 | 20130731
Length = 1628
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 37/207 (17%)
Query: 312 LDKMKSLFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYL 367
LDK + +F K G ++ RSVI+ D Y +NE+GIP A R+T+ ERV N
Sbjct: 398 LDKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSA-- 455
Query: 368 QKLVDENL--------CLAYKEGVSTYSLR-------------EGSKG--------HTYL 398
KL+D L + Y + ST L+ + S+G H +
Sbjct: 456 -KLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLRSSTSRRLQSSRGVIMHHGKIHEHE 514
Query: 399 KPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI-HDDHTVKINPLICGPLGADFDGD 457
G++V+R + DGD+V +NR PT HK S+ A VV + + TV+++ C ADFDGD
Sbjct: 515 FEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGD 574
Query: 458 CVHLFYPQSLAAKAEVVELFSVEKQLL 484
+++ +PQ ++AE + + Q +
Sbjct: 575 EINVHFPQDEISRAEAYNIVNANNQYV 601
>Medtr4g086290.2 | DNA-directed RNA polymerase I protein | HC |
chr4:33799127-33783168 | 20130731
Length = 1179
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 37/207 (17%)
Query: 312 LDKMKSLFISKGSG----FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYL 367
LDK + +F K G ++ RSVI+ D Y +NE+GIP A R+T+ ERV N
Sbjct: 398 LDKKEGIFRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNSA-- 455
Query: 368 QKLVDENL--------CLAYKEGVSTYSLR-------------EGSKG--------HTYL 398
KL+D L + Y + ST L+ + S+G H +
Sbjct: 456 -KLMDAILNGPDTHPGAILYTDKTSTLRLQKDKSLRSSTSRRLQSSRGVIMHHGKIHEHE 514
Query: 399 KPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYI-HDDHTVKINPLICGPLGADFDGD 457
G++V+R + DGD+V +NR PT HK S+ A VV + + TV+++ C ADFDGD
Sbjct: 515 FEGKVVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGD 574
Query: 458 CVHLFYPQSLAAKAEVVELFSVEKQLL 484
+++ +PQ ++AE + + Q +
Sbjct: 575 EINVHFPQDEISRAEAYNIVNANNQYV 601
>Medtr4g061800.1 | DNA-directed RNA polymerase I protein | HC |
chr4:22876102-22852950 | 20130731
Length = 1388
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 114/242 (47%), Gaps = 17/242 (7%)
Query: 326 FSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDEN------LCLAY 379
++ R+VI+ D +I EV IP +A+ +T+ ERV HN+ L++ V +
Sbjct: 360 YTGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMVK 419
Query: 380 KEGVSTYSLR--EGSKGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDD 437
+ G ++++L+ ++ LK G IV R I DGD+V NR P+ H+ S+ +
Sbjct: 420 EAGGNSWNLKILTRTRRADELKFGDIVERHIEDGDVVLFNRQPSLHRMSMMCHRARVMPW 479
Query: 438 HTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLSSHXXXXXXXXXX 497
T++ N +C P ADFDGD +++ PQ+ A+ E + L +V+ L +
Sbjct: 480 RTLRFNESVCNPYNADFDGDEMNIHVPQTEEARTEALLLMTVQNNLCTPKNGEILVASTQ 539
Query: 498 XXXXXXXXXVKK-GFMDRAAANQMAMFLS-----LPLPQPALLKAGSGDCYWTSTQILQC 551
+K F DR+ + + ++ + LP PA++K W+ Q+
Sbjct: 540 DFLTSSFLITRKDTFYDRSTFSLICSYMGDGMDPVDLPTPAIIKPVE---LWSGKQLFNI 596
Query: 552 AL 553
L
Sbjct: 597 LL 598
>Medtr0002s0510.1 | DNA-directed RNA polymerase subunit beta | LC |
scaffold0002:218431-229740 | 20130731
Length = 3148
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 117/470 (24%), Positives = 181/470 (38%), Gaps = 76/470 (16%)
Query: 57 CESCGTS--EAGKCEGHFGYIELPVPIYH-------PSHVSEL-----KKMLSLVCLN-C 101
C+ CG ++ GYI+L P+ H PS+++ L KK+ LV +
Sbjct: 1188 CQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKPLKKLEGLVYGDFS 1247
Query: 102 LKMKKTKFPS--SSSGLAQ-------RLLSPCCQEPNAAQVSIREVKTGDGACY------ 146
TK P+ GL + +SP P A RE+ TG GA
Sbjct: 1248 FARPSTKKPTFLRLRGLFEEEIASCNHSISPFFSTPGFATFRNREIATGAGAIREQLADL 1307
Query: 147 -LVLKVSKSKMQDGFWRFLDKYGYRYEVDHTRALLPCEVMEMIKRFPLETKKKLAGKGYF 205
L + + S ++ W+ L+ GY + R +V +I+R L K
Sbjct: 1308 DLRIIIENSLVE---WKELEDEGYSGDEWEDRKRRIRKVF-LIRRMQL--AKHFIQTNVE 1361
Query: 206 PQDGYVIKYLPVPPNCLXXXXXXXXXXXXXXXXXXTFLRKLLRKVEVIRSSRSGEPNFES 265
P + V+ LPV P L + R VIR + + +
Sbjct: 1362 P-EWMVLCLLPVLPPELRPIVYRSGDKVVTSDINELYKR-------VIRRNNNLAYLLKR 1413
Query: 266 HQVEANDL--------QSVVDQYLQIRGCAKPARDIETHFGVNKELSDASNKAWLDKMKS 317
++ DL Q VD L +P RD H V K LSD + + +
Sbjct: 1414 SELAPADLVMCQEKLVQEAVDTLLDSGSRGQPTRD--GHNKVYKSLSDVI-EGKEGRFRE 1470
Query: 318 LFISKGSGFSSRSVITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCL 377
+ K +S RSVI +++ G+P EIA ++ Q V +L
Sbjct: 1471 TLLGKRVDYSGRSVIVVGPSLSLHQCGLPLEIAIKL-------------FQLFVIRDLIT 1517
Query: 378 AYKEGVSTYSLREGSKGHTYLKPGQI--VHRRIMDGDIVFINRPPTTHKHSLQALVVYIH 435
K S + +K + K + + + +M G V +NR PT H+ +QA +
Sbjct: 1518 --KRATSNVRI---AKRKIWEKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPTLV 1572
Query: 436 DDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 485
+ T+ ++PL+C ADFDGD + + P SL A+AE L LLS
Sbjct: 1573 EGRTISLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEARLLMFSHMNLLS 1622
>Medtr3g062790.1 | DNA-directed RNA polymerase subunit beta | HC |
chr3:28379539-28382385 | 20130731
Length = 710
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 27/217 (12%)
Query: 273 LQSVVDQYLQ--IRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRS 330
+Q VD L IRG +P RD H V K SD + + + + K +S RS
Sbjct: 356 VQEAVDTLLDNGIRG--QPMRD--GHNKVYKSFSDII-EGKEGRFRETLLGKRVDYSGRS 410
Query: 331 VITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLRE 390
VI ++ G+P EIA + ++ L+ ++ A GV+ +RE
Sbjct: 411 VIVVGPSLSLHRCGLPREIA--------IELFQTFLIRGLIRKHF--ASNIGVAKSKIRE 460
Query: 391 GSKGHTYLKPGQI--VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICG 448
K + + + +M G V +NR PT H+ +QA + + + ++PL+C
Sbjct: 461 --------KEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCK 512
Query: 449 PLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 485
ADFDGD + + P SL A+AE L LLS
Sbjct: 513 GFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLS 549
>Medtr3g062770.1 | DNA-directed RNA polymerase subunit beta | HC |
chr3:28371717-28374673 | 20130731
Length = 710
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 27/217 (12%)
Query: 273 LQSVVDQYLQ--IRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRS 330
+Q VD L IRG +P RD H V K SD + + + + K +S RS
Sbjct: 356 VQEAVDTLLDNGIRG--QPMRD--GHNKVYKSFSDII-EGKEGRFRETLLGKRVDYSGRS 410
Query: 331 VITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLRE 390
VI ++ G+P EIA + ++ L+ ++ A GV+ +RE
Sbjct: 411 VIVVGPSLSLHRCGLPREIA--------IELFQTFLIRGLIRKHF--ASNIGVAKSKIRE 460
Query: 391 GSKGHTYLKPGQI--VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICG 448
K + + + +M G V +NR PT H+ +QA + + + ++PL+C
Sbjct: 461 --------KEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCK 512
Query: 449 PLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 485
ADFDGD + + P SL A+AE L LLS
Sbjct: 513 GFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLS 549
>Medtr4g051130.1 | DNA-directed RNA polymerase subunit beta | HC |
chr4:18155924-18149828 | 20130731
Length = 1748
Score = 65.9 bits (159), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 27/217 (12%)
Query: 273 LQSVVDQYLQ--IRGCAKPARDIETHFGVNKELSDASNKAWLDKMKSLFISKGSGFSSRS 330
+Q VD L IRG +P RD H V K SD + + + + K +S RS
Sbjct: 1408 VQEAVDTLLDNGIRG--QPMRD--GHNKVYKSFSDII-EGKEGRFRETLLGKRVDYSGRS 1462
Query: 331 VITGDGYKRINEVGIPHEIAQRITFEERVNSHNMCYLQKLVDENLCLAYKEGVSTYSLRE 390
VI ++ G+P EIA + ++ L+ ++ A GV+ +RE
Sbjct: 1463 VIVVGPSLSLHRCGLPREIA--------IELFQTFLIRGLIRKHF--ASNIGVAKSKIRE 1512
Query: 391 GSKGHTYLKPGQI--VHRRIMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICG 448
K + + + +M G V +NR PT H+ +QA + + + ++PL+C
Sbjct: 1513 --------KEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCK 1564
Query: 449 PLGADFDGDCVHLFYPQSLAAKAEVVELFSVEKQLLS 485
ADFDGD + + P SL A+AE L LLS
Sbjct: 1565 GFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLS 1601
>Medtr8g016510.1 | DNA-directed RNA polymerase subunit beta | HC |
chr8:5581059-5582468 | 20130731
Length = 404
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%)
Query: 408 IMDGDIVFINRPPTTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSL 467
+M G V +NR PT H+ +QA + + + ++PL+C ADFDGD + + P SL
Sbjct: 189 VMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSL 248
Query: 468 AAKAEVVELFSVEKQLLS 485
A+ E L + LLS
Sbjct: 249 EAQVEARLLMFSDTNLLS 266