Miyakogusa Predicted Gene

Lj0g3v0092629.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0092629.1 Non Characterized Hit- tr|I0YLZ5|I0YLZ5_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea C-,48.65,4e-19,no
description,Nucleotide-binding, alpha-beta plait; no description,Zinc
finger, CCHC-type; RRM,RNA ,CUFF.5082.1
         (181 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC...    59   3e-09
Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC...    59   3e-09
Medtr1g083400.1 | pre-mRNA-splicing factor SF2-like protein | HC...    57   9e-09
Medtr3g092580.1 | pre-mRNA-splicing factor SF2-like protein | HC...    56   2e-08
Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC...    55   3e-08
Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC...    55   3e-08

>Medtr8g058530.1 | pre-mRNA-splicing factor SF2-like protein | HC
          | chr8:20148291-20144393 | 20130731
          Length = 303

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDG- 60
          VYVGNL   + ER++ED F  YG +  +   V  RPPGYAF+EF+D +DA DAI   DG 
Sbjct: 9  VYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRDGY 68

Query: 61 ---KNGWRVELSHNSK 73
              +  RVE +H  +
Sbjct: 69 DFDGHRLRVEAAHGGR 84


>Medtr7g108810.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr7:44331530-44321717 | 20130731
          Length = 401

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 6/76 (7%)

Query: 4   VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDG- 60
           VYVGNL   + ER++ED F  YG +  +   V  RPPGYAF+EF+D +DA DAI   DG 
Sbjct: 110 VYVGNLPGDIREREVEDLFMKYGHITHIDLKVPPRPPGYAFVEFEDVQDAEDAIRGRDGY 169

Query: 61  ---KNGWRVELSHNSK 73
               +  RVE +H  +
Sbjct: 170 DFDGHRLRVEAAHGGR 185


>Medtr1g083400.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr1:37124801-37119597 | 20130731
          Length = 290

 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 6/76 (7%)

Query: 4   VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
           +YVGNL   +  R++ED F  YG +  +   +  +PPGYAF+EF+D RDA DAI+  DG 
Sbjct: 40  LYVGNLPGDIRLREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGY 99

Query: 62  --NGWR--VELSHNSK 73
             +G+R  VEL+H  +
Sbjct: 100 DFDGYRLLVELAHGGR 115


>Medtr3g092580.1 | pre-mRNA-splicing factor SF2-like protein | HC |
           chr3:42306430-42301242 | 20130731
          Length = 380

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 6/76 (7%)

Query: 4   VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
           +YVGNL   + E ++ED F  YG +  +   V  RPP Y F+EFD+ RDA DAI   DG 
Sbjct: 116 IYVGNLPADIRESEIEDLFYKYGRIMEIELKVPPRPPCYCFVEFDNARDAEDAIRGRDGY 175

Query: 62  NG----WRVELSHNSK 73
           N      RVEL+H  +
Sbjct: 176 NFDGCRLRVELAHGGR 191


>Medtr7g112760.1 | pre-mRNA-splicing factor SF2-like protein | HC
          | chr7:46405226-46398545 | 20130731
          Length = 292

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          +YVGNL   +  R++ED F  +G +  +   +  RPPGYAF+EF+D RDA DAI   DG 
Sbjct: 9  IYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAEDAIRYRDGY 68

Query: 62 --NGW--RVELSHNSK 73
            +G+  RVEL+H  +
Sbjct: 69 KFDGFRLRVELAHGGR 84


>Medtr7g112760.2 | pre-mRNA-splicing factor SF2-like protein | HC
          | chr7:46405206-46401029 | 20130731
          Length = 252

 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 6/76 (7%)

Query: 4  VYVGNLDPRVSERDLEDEFRLYGVLRSV--WVARRPPGYAFLEFDDKRDALDAIHALDGK 61
          +YVGNL   +  R++ED F  +G +  +   +  RPPGYAF+EF+D RDA DAI   DG 
Sbjct: 9  IYVGNLPGDIRLREVEDLFYKFGPIVDIELKIPPRPPGYAFVEFEDARDAEDAIRYRDGY 68

Query: 62 --NGW--RVELSHNSK 73
            +G+  RVEL+H  +
Sbjct: 69 KFDGFRLRVELAHGGR 84