Miyakogusa Predicted Gene

Lj0g3v0092139.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0092139.1 tr|F2E5W0|F2E5W0_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,90,0.000000003,seg,NULL;
coiled-coil,NULL,CUFF.5035.1
         (711 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g078530.1 | hypothetical protein | HC | chr2:32771451-3277...   321   2e-87
Medtr7g100830.1 | protamine P1 family protein | HC | chr7:406377...    51   5e-06

>Medtr2g078530.1 | hypothetical protein | HC |
           chr2:32771451-32773913 | 20130731
          Length = 709

 Score =  321 bits (822), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 186/363 (51%), Positives = 198/363 (54%), Gaps = 22/363 (6%)

Query: 1   MDSERHHRXXXXXXXXXXXXXXXXELFVCFXXXXXXXXXXXXXXXXXXPSRGRDPPPQIX 60
           M++E+HHR                ELFVCF                  PSR RD P QI 
Sbjct: 1   METEKHHRTTSNNSSTS-------ELFVCFTSRLSSSSMKLSSKSILSPSRSRDQP-QIS 52

Query: 61  XXXXXXXXXXXNGSMKGGQASPMFPTNGKRRGCGFENPEPSSPKVTCIGQVRVKTKKQGK 120
                      NGSMKGGQASPMFPT GK+RGCGFENPEPSSPKVTCIGQVRVKTKKQGK
Sbjct: 53  LSSSLSRRLKSNGSMKGGQASPMFPTGGKKRGCGFENPEPSSPKVTCIGQVRVKTKKQGK 112

Query: 121 KMRARSKRRGEASFRKVAEMQGFQXXXXXXXXPDLTRQNSQSSFGFQNHSQSLQQECLKH 180
           KMR+RSKRRGEASFR+                PDLTRQNSQS   +QNH QSLQQECLKH
Sbjct: 113 KMRSRSKRRGEASFRRGG---------GEGTNPDLTRQNSQSL--YQNH-QSLQQECLKH 160

Query: 181 RNQRWVHLPLTICEALREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240
           RNQRWVHLPLTICEALRE                                          
Sbjct: 161 RNQRWVHLPLTICEALREFSCFFPCRSSCMSNERDKEEKGSLEGRRGVRSSGEHSREGSC 220

Query: 241 XAALARWLVTLQEGDGKGRGIXXXXXXXXXXXXXXXXXXXXXXXRSQNR--SQRRHVFED 298
            AA ARWLV  Q+GDGKGR I                       +   R  SQRRH+FED
Sbjct: 221 GAAFARWLVAYQDGDGKGREIEVMVEHHDEMEMVMDDEDDGGREKGGERSYSQRRHIFED 280

Query: 299 IDIDLVXXXXXXXXXXXXXXXXXXXRVSICIPPKNALLLMRCRSDPVKMAALANRFWESP 358
           +DIDLV                   RVSIC+PPKNALLLMRCRSDPVKMAALANRFWESP
Sbjct: 281 LDIDLVDEKIQEEFGGEVEEDEEKGRVSICVPPKNALLLMRCRSDPVKMAALANRFWESP 340

Query: 359 LKK 361
           L K
Sbjct: 341 LHK 343



 Score =  163 bits (412), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 120/265 (45%), Positives = 126/265 (47%), Gaps = 48/265 (18%)

Query: 486 CVSLPEADADLDKPETEDTHLRXXXXXXXXXXXXVP-------AMLTSSEQENFXXXXXX 538
           CV +    ADL+KPETE+TH R                       + SSEQEN+      
Sbjct: 454 CVLVDLLHADLEKPETEETHQREDEEKQESSELSSSSSSSSPETFIASSEQENYEAEAEE 513

Query: 539 XXXXXXXXXXXXXXXXXXPTHEGSGPVNGPESKEPETGSKKE-----TLPECLLLMMCEP 593
                             P  E  G V  PE    E GSKKE     TLPECLLLMMCEP
Sbjct: 514 KVSTEEEETTHQE-----PDPE-VGLVVLPEQ---ENGSKKEERERETLPECLLLMMCEP 564

Query: 594 KLSMEVSKETWVCSTDFIRRLPGKTAVKXXXXXXXXXXXXXXXXXXXXXXX--------- 644
           KLSMEVSKETWVCSTDFIR LP +   K                                
Sbjct: 565 KLSMEVSKETWVCSTDFIRWLPERPTGKPAGVEKKVTVESSSSTKPKVKVKPAHPPLMQP 624

Query: 645 -----------XXXXXXXXIEQKLVG---SHNGYEPFVLTRCKSEPMRSAAKLAPEA-CF 689
                              IEQKLVG   S NGYEPFVLTRCKSEPMRSA KLAPEA CF
Sbjct: 625 PRSSCCLPVTGAGMSMATMIEQKLVGCSKSRNGYEPFVLTRCKSEPMRSATKLAPEASCF 684

Query: 690 WNNRKLEPTAP---LGVGAQAGVGF 711
           WNNRKLEP  P   LGVGA AGVGF
Sbjct: 685 WNNRKLEPHPPPATLGVGAPAGVGF 709


>Medtr7g100830.1 | protamine P1 family protein | HC |
           chr7:40637753-40638888 | 20130731
          Length = 294

 Score = 50.8 bits (120), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/31 (67%), Positives = 26/31 (83%)

Query: 330 PPKNALLLMRCRSDPVKMAALANRFWESPLK 360
           PPKNALLL RCRS P + ++LA+RFW SPL+
Sbjct: 157 PPKNALLLTRCRSAPYRSSSLASRFWSSPLR 187