Miyakogusa Predicted Gene

Lj0g3v0091599.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0091599.1 Non Characterized Hit- tr|I1MPT8|I1MPT8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13099
PE,89.43,0,RIBOSOMALL6,Ribosomal protein L6, bacterial-type; SUBFAMILY
NOT NAMED,NULL; 60S/50S RIBOSOMAL PROTEI,CUFF.5000.1
         (227 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0316s0010.1 | 50S ribosomal protein L6 | HC | scaffold0316:...   294   4e-80
Medtr1g090700.1 | 60S ribosomal protein L6 | HC | chr1:40681120-...    85   5e-17
Medtr1g077690.1 | 60S ribosomal protein L6 | HC | chr1:34704747-...    84   1e-16

>Medtr0316s0010.1 | 50S ribosomal protein L6 | HC |
           scaffold0316:15557-13192 | 20130731
          Length = 163

 Score =  294 bits (753), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 140/163 (85%), Positives = 154/163 (94%)

Query: 65  LEGQDIAVKGPLGELALSYPREVLVEREESGALRVKKAVETRRANQMHGLFRTLTDNLVV 124
           +EGQ    KGPLGEL+L+YPREV VER+E G L+V KAVETRRANQMHGLFRTLTDN+VV
Sbjct: 1   MEGQYFHAKGPLGELSLTYPREVKVERQEEGVLKVSKAVETRRANQMHGLFRTLTDNIVV 60

Query: 125 GVSKGFEKKLQLVGVGYRATVEGNDVVLNLGFSHPVRMTIPDGLKVKVEENTRITVSGYD 184
           GVSKGFEKKLQL+GVGYRATVEGN+VVLNLGFSHPV+MTIP+GLKVKV+ENTRITVSGYD
Sbjct: 61  GVSKGFEKKLQLIGVGYRATVEGNEVVLNLGFSHPVKMTIPEGLKVKVDENTRITVSGYD 120

Query: 185 KSEIGQFAASIRRWRPPEPYKGKGVKYADEIVRRKEGKAGKKK 227
           KSEIGQFAASIR+WRPPEPYKGKG+KY DE+VRRKEGKAGKKK
Sbjct: 121 KSEIGQFAASIRKWRPPEPYKGKGIKYEDEVVRRKEGKAGKKK 163


>Medtr1g090700.1 | 60S ribosomal protein L6 | HC |
           chr1:40681120-40682879 | 20130731
          Length = 102

 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 58/89 (65%), Gaps = 2/89 (2%)

Query: 130 FEKKLQLVGVGYRATVE--GNDVVLNLGFSHPVRMTIPDGLKVKVEENTRITVSGYDKSE 187
           F + L++VGVGY+A  E  G  + L LG+SH V ++ P  ++V   +N  I  +G DK  
Sbjct: 5   FFRFLKIVGVGYKARAESAGRLLYLKLGYSHEVELSAPPAVRVFCFKNNVICCTGIDKQR 64

Query: 188 IGQFAASIRRWRPPEPYKGKGVKYADEIV 216
           + QFAA++R  +PPE YKGKG+ Y DE++
Sbjct: 65  VHQFAATVRNCKPPEVYKGKGIMYTDEVI 93


>Medtr1g077690.1 | 60S ribosomal protein L6 | HC |
           chr1:34704747-34706917 | 20130731
          Length = 102

 Score = 83.6 bits (205), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 56/85 (65%), Gaps = 2/85 (2%)

Query: 134 LQLVGVGYRATVE--GNDVVLNLGFSHPVRMTIPDGLKVKVEENTRITVSGYDKSEIGQF 191
           L++VGVGY+A  E  G  + L LG+SH V ++ P  ++V   +N  I  +G DK  + QF
Sbjct: 9   LKIVGVGYKARAESAGRLLYLKLGYSHEVELSAPPAVRVFCFKNNVICCTGIDKQRVHQF 68

Query: 192 AASIRRWRPPEPYKGKGVKYADEIV 216
           AA++R  +PPE YKGKG+ Y DE++
Sbjct: 69  AATVRNCKPPEVYKGKGIMYTDEVI 93