Miyakogusa Predicted Gene

Lj0g3v0091569.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0091569.1 Non Characterized Hit- tr|D7L0H8|D7L0H8_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,56.36,3e-19,GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE
1,NULL; coiled-coil,NULL; seg,NULL,CUFF.4990.1
         (183 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr0004s0240.1 | hypothetical protein | HC | scaffold0004:1020...    93   1e-19

>Medtr0004s0240.1 | hypothetical protein | HC |
           scaffold0004:102002-96075 | 20130731
          Length = 354

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/124 (45%), Positives = 61/124 (49%), Gaps = 19/124 (15%)

Query: 54  ISRFPSNIDAHLR----XXXXXXXXXXXXXXXXXXXXXXXXXSNHLXXXXXXXXXXXXXX 109
           ISRFPSNIDAHLR                             SNH               
Sbjct: 54  ISRFPSNIDAHLRPIRPPLNLQQNPNPNPNSNPILNLHQNPNSNHQQQQQQ--------- 104

Query: 110 XXXXXXKMVRPGNPMELQMAYQDAWRVCHPDFKRPFSSLEDACESFSHYNLLLMSDLLCS 169
                 KM+RPGN MELQMAYQDAWRVCHPDFKRPFSSLEDACE    Y+++   +    
Sbjct: 105 ------KMIRPGNQMELQMAYQDAWRVCHPDFKRPFSSLEDACERLLPYHVVADYEAEED 158

Query: 170 GRIL 173
            RIL
Sbjct: 159 DRIL 162